Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq1679 174 1e-38 seq323 107 2e-18 >seq1679 Length=19720504 Score = 174 bits (192), Expect = 1e-38 Identities = 426/639 (67%), Gaps = 10/639 (2%) Strand=Plus/Plus Query 29823 TGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTT 29882 |||| ||| | || |||| ||||| | ||||| | | ||||| ||| || || | Sbjct 7098244 TGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGGTTAAGCTGTTCCTTGAGGGGCT 7098303 Query 29883 CCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT- 29941 | |||| | ||| | ||| ||| || | | ||||| ||||| ||||| | Sbjct 7098304 CGACGTGGTTTTTGTAAATGTGGCAGTCGCCGATGACGTGGATGAACTC-CCCGGCGCGC 7098362 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || |||||| | || | || | |||||| || | ||| ||| ||||| ||||| Sbjct 7098363 AGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGCGCGTACGAGGCAATGTTGAAGGGC 7098422 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || || ||||| ||||||| |||||| | || ||||||||||| || | | | Sbjct 7098423 ACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATTTGGCACGAGAGCTCGCCCTTGGAC 7098482 Query 30062 ACGTAAAACTG---ACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 30118 ||||||||||| |||| |||||| || || || ||||||||| || | Sbjct 7098483 ACGTAAAACTGCGCGAACAT---GTGGCAGGGCGGCAGGGCCATGAGGTGGAACGCCGCC 7098539 Query 30119 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 30178 ||||||||||| | | ||| ||||| | ||| ||||| | ||||| || ||| Sbjct 7098540 GGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGGTTCGTTTTGATGGTGTGCAC- 7098598 Query 30179 GCGTTTTGC-AGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTC 30237 | | || ||||| || || ||| || | ||| || | |||| | ||||||| Sbjct 7098599 AAGCTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTACTCGTCGTGCATGGTCTTGTACTC 7098658 Query 30238 TGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 30297 || || || || | ||||||||| ||||| || || || || || ||||| || | | Sbjct 7098659 GGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGGCCGAGATCGCCCTCCTCGCGATC 7098718 Query 30298 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 30357 | || ||| ||||||| | | | | ||| |||||| ||||||| || | | | Sbjct 7098719 CGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCGTTGCCGTCCCAAATGTGAATGTC 7098778 Query 30358 CTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 30417 ||| || ||| |||| | | ||| || || |||||| ||||| ||||| | Sbjct 7098779 CTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAGATGAACCAGAGCAGTTCCTCGGC 7098838 Query 30418 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 30456 |||| | ||||||||| | ||||||||| || || || Sbjct 7098839 GACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGCGG 7098877 >seq323 Length=717221 Score = 107 bits (118), Expect = 2e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 49066 TCTCGAGCACGAGCTGGGCTATCCTGTCGCCCCTCTCGACCCGAAAGGGGTCGCACCCAA 49125 |||||||||||||||| || ||||||||||| || ||| | || ||| || Sbjct 624560 TCTCGAGCACGAGCTGCGCGATCCTGTCGCCGACCTTGACGTCGAGGGCCTCGTCGCCGT 624501 Query 49126 AGTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGA 49185 ||| || || | |||||||| ||| || | ||||||| |||| | || || || |||| Sbjct 624500 GGTTGAAGAGCACGACGCCGACGTTTCCGCGGTAGTCGCGGTCGATGACGCCCGCGCCGA 624441 Query 49186 CGTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCG 49245 |||| || || ||| || || || |||| || ||||| | ||||||| ||||| Sbjct 624440 CGTCGATGTGCTTCTTCCACGCGAGCCCCGACCGCGGCGCCACGCGGCCGTAGGTGCCCG 624381 Query 49246 GGGGCATCTTCACGGCCAGGTCCGTCTTTACCAG 49279 ||| | || ||||||| ||| ||||| || || Sbjct 624380 CGGGGACCTGGACGGCCACGTCGGTCTTGACGAG 624347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406301253825924