Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq1679 170 2e-37 >seq1679 Length=19720504 Score = 170 bits (188), Expect = 2e-37 Identities = 521/797 (65%), Gaps = 15/797 (2%) Strand=Plus/Plus Query 6407 TCCATCTTCAGGGCCGAGTGCGGCCGGTACCCTTCCAACACGAAGTCCTCGCTCCTAAAG 6466 |||||||| | || | ||| ||| |||||| | | ||| ||||||| | | ||| Sbjct 7098162 TCCATCTTGATGGTCTTGTGGGGCTTGTACCCCACAAGTTCGAGGTCCTCGTACTTGAAG 7098221 Query 6467 TCATCGATTGAGGTGACGGCTCGAATAATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGT 6526 | ||||| |||| | | | || ||||||| |||||| || || ||||| || Sbjct 7098222 CCGTCGATGTCGGTGTTGTCGGTGTTGATCTTGAGCTTGGGGAAGGGGCGCGGCTCGCGG 7098281 Query 6527 TGCAGCTGGATCCGGAGCCGCTCGATGTGGTTCAGGTAGATATGCGCA-TCCCCCA--AC 6583 | ||||| | ||| |||||| |||||| ||| || || ||| || || | || Sbjct 7098282 TTAAGCTGTTCCTTGAGGGGCTCGACGTGGTTTTTGTAAATGTG-GCAGTCGCCGATGAC 7098340 Query 6584 GTATGCACCAGCTCCCCAGGAACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGA 6643 || | | | |||||| | || || | | |||| || | |||||| || Sbjct 7098341 GT--GGATGAACTCCCCGGCGCGCAGGCCGGTGCACTTTGCGAGCAGATGCGTGAGAAGC 7098398 Query 6644 GCGTAACTAGCAATGTTGAACGGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGC 6703 ||||| ||||||||||| ||||| || | || ||||| ||||| || || || | Sbjct 7098399 GCGTACGAGGCAATGTTGAAGGGCACGCCCAGGCCGATGTCGCCCGACCGCTGGTACATT 7098458 Query 6704 TGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGC 6763 ||||| || ||||| || || | ||||| || || || ||||||| || || || Sbjct 7098459 TGGCACGAGAGCTCGCCCTTGGACACGTAAAACTGCGCGAACATGTGGCAGGGCGGCAGG 7098518 Query 6764 GCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGG 6823 ||||| || ||| || ||||||||| || | | | || | | ||| ||| Sbjct 7098519 GCCATGAGGTGGAACGCCGCCGGGTTCCAGGCCGAGAGGATCATGCGGCGGTCCGTCGGG 7098578 Query 6824 TTCCGCTTCAAGGTGTCGATCACGTACTGC---AGCTGGTCCGCTCCCTGTCCCGAATAG 6880 ||| || | ||||| | || | |||| |||||||| | ||||| || | || Sbjct 7098579 TTCGTTTTGATGGTGTGCA-CAAG--CTGCGCGAGCTGGTCTACGCCCTGGCCGGCGTAC 7098635 Query 6881 TCCGCTTCGCTCCCCCGATACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGG 6940 || | | | | ||||| || |||||||| | ||||||||| ||||| || ||| Sbjct 7098636 TCGTCGTGCATGGTCTTGTACTCGGCGCCAAAGTGGCGCCACTGGAAGCCGTAAACGGGG 7098695 Query 6941 CCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCG 7000 || | ||||||||||| ||| | || || |||||| || | | || |||||| Sbjct 7098696 CCGAGATCGCCCTCCTCGCGATCCGTGAGGCCGATCTTGTCAAGGTACGCGCGGGACCCG 7098755 Query 7001 TGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTC 7060 | ||||||| || | | || | ||| ||||| | | ||| | ||| Sbjct 7098756 TTGCCGTCCCAAATGTGAATGTCCTTTTCCTGCAGCGACTTGGCGCTGGTGTCGCCCGAG 7098815 Query 7061 ACGAACCACAGCAGCTCCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGC 7120 | |||||| ||||| |||||| | ||||| ||| | || || || |||||||||||| Sbjct 7098816 ATGAACCAGAGCAGTTCCTCGGCGACGCCGCGCCAAAAGACGCGCTTGGTCGTCAGCAGC 7098875 Query 7121 GGAA---ATTCGCCCCGAAGGTTGTATCGGGCCTGTGTGCCGAACACGGAGAGGGTCCCC 7177 || | ||| | || ||| | || || | ||||| || |||||| ||||| Sbjct 7098876 GGGATGGTGTCGTCGCGGAGGCTATAGCGCATCGTCGTGCCAAAGGTGGAGAGCGTCCCG 7098935 Query 7178 GTCCCGGTCCGGTCCCC 7194 |||||||||||||| || Sbjct 7098936 GTCCCGGTCCGGTCGCC 7098952 Score = 170 bits (188), Expect = 2e-37 Identities = 521/797 (65%), Gaps = 15/797 (2%) Strand=Plus/Minus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTT 34210 || |||||||||||||| ||||| |||||| || ||||| | || || | ||| Sbjct 7098952 GGCGACCGGACCGGGACCGGGACGCTCTCCACCTTTGGCACGACGATGCGCTATAGCCTC 7098893 Query 34211 CGGGGCGAAT---TTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAG 34267 || | ||| | |||||||||||||| || || || | ||| ||||| | |||| Sbjct 7098892 CGCGACGACACCATCCCGCTGCTGACGACCAAGCGCGTCTTTTGGCGCGGCGTCGCCGAG 7098833 Query 34268 GAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTG 34327 || ||||| |||||| | ||| | ||| | | ||||| ||| | || | Sbjct 7098832 GAACTGCTCTGGTTCATCTCGGGCGACACCAGCGCCAAGTCGCTGCAGGAAAAGGACATT 7098773 Query 34328 AAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGG 34387 | || ||||||| ||||||| || | | || |||||| || || | ||| Sbjct 7098772 CACATTTGGGACGGCAACGGGTCCCGCGCGTACCTTGACAAGATCGGCCTCACGGATCGC 7098713 Query 34388 GAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTAT 34447 ||||||||||| | ||||| || ||||| ||||||||| | |||||||| || ||||| Sbjct 7098712 GAGGAGGGCGATCTCGGCCCCGTTTACGGCTTCCAGTGGCGCCACTTTGGCGCCGAGTAC 7098653 Query 34448 CGGGGGAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT---GCAGTACGTGATC 34504 | | | | || || | || ||||| | |||||||| |||| | || | Sbjct 7098652 AAGACCATGCACGACGAGTACGCCGGCCAGGGCGTAGACCAGCTCGCGCAG--CTTG-TG 7098596 Query 34505 GACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAG 34564 ||||| | || |||||| ||| | | || | | | || ||||||||| | Sbjct 7098595 CACACCATCAAAACGAACCCGACGGACCGCCGCATGATCCTCTCGGCCTGGAACCCGGCG 7098536 Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 | ||| || ||||| || || || ||||||| || || || ||||| | || Sbjct 7098535 GCGTTCCACCTCATGGCCCTGCCGCCCTGCCACATGTTCGCGCAGTTTTACGTGTCCAAG 7098476 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||| || ||||| | || || || ||||| ||||| || | || ||||| ||| Sbjct 7098475 GGCGAGCTCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTC 7098416 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCT 34744 |||||||| ||||| || |||||| | || |||| | | || || | Sbjct 7098415 AACATTGCCTCGTACGCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCC 7098356 Query 34745 GGGGAGCTGGTGCATACGT--TGGGGGA-TGCGCATATCTACCTGAACCACATCGAGCGG 34801 |||||| | | | |||| | || || ||| || || ||| |||||| |||||| Sbjct 7098355 GGGGAGTTCATCC--ACGTCATCGGCGACTGC-CACATTTACAAAAACCACGTCGAGCCC 7098299 Query 34802 CTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAATTATTCGAGCC 34861 ||| | ||||| | || ||||| || || |||||| ||||||| || | | | Sbjct 7098298 CTCAAGGAACAGCTTAACCGCGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGAC 7098239 Query 34862 GTCACCTCAATCGATGACTTTAGGAGCGAGGACTTCGTGTTGGAAGGGTACCGGCCGCAC 34921 |||| ||||| | ||| | | ||||||| ||| | | |||||| ||| ||| Sbjct 7098238 AACACCGACATCGACGGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCAC 7098179 Query 34922 TCGGCCCTGAAGATGGA 34938 | || | |||||||| Sbjct 7098178 AAGACCATCAAGATGGA 7098162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448252050741840