Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq253 141 2e-28 seq1811 125 2e-23 seq1824 114 3e-20 >seq253 Length=1516 Score = 141 bits (156), Expect = 2e-28 Identities = 194/271 (72%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 7451 TAATATTTGGTGGCTTTTCTGGTATTATAGGTACTATATTTTCTATGATTATAAGGTTAG 7510 |||| ||||| || |||||||||||| ||||||| | | ||| || | || || ||| Sbjct 866 TAATCTTTGGAGGTTTTTCTGGTATTGTAGGTACCGTGCTGTCTTTGCTGATCAGAATAG 807 Query 7511 AATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATTA 7570 || | || | || ||| |||||| | ||| |||| || || ||||| |||||| Sbjct 806 AACTTTCTTCGCCAGGTGTTCAAATTCTTGCTGGAAATAATCATCTCTACAATGTTATTG 747 Query 7571 TTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTT 7630 |||| || || || ||| |||| || || ||||| ||||| || || | || || |||| Sbjct 746 TTACAGCTCACGCTTTTATTATAATCTTTTTTTTCGTTATACCTTTTCTTATTGGAGGTT 687 Query 7631 TCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTA 7690 | || ||||| ||||| ||| | | | || ||||| || |||||||| || | | Sbjct 686 TTGGTAATTGGTTCGTCCCTATTCTTTTGGGGAGCCCTGACATAGCTTTTCCTAGATTGA 627 Query 7691 ACAATATAAGTTTTTGATTACTACCGCCTTC 7721 | || || |||||||| |||| |||||||| Sbjct 626 ATAACATTAGTTTTTGGCTACTTCCGCCTTC 596 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 |||||||||||||||||| || || | ||| |||||||| | |||||| ||||| || | Sbjct 193 TTCAGGATGACCAAAAAACCAAAAAAGATGCTGATAAAGAACAGGATCTCCTCCTCCGGC 252 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 ||||||||||| ||||||||||||| | ||| || |||| Sbjct 253 AGGATCAAAAAAAGTAGTATTAAAATTACGATCTGTCAAAA 293 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 371375 TATGCATAGATAAACCAGGTACTCTCATATTAAATATCGTAGTAATAAAGTTTATAGCGC 371434 ||||||||| || || || ||| |||||||| || ||||||||||| || || || | Sbjct 381 TATGCATAGTTATTCCGGGGCTTCTTATATTAAAGATAGTAGTAATAAAATTAATTGCCC 440 Query 371435 CTAGAAGAGAAGATATACCTGCAAGATGTAAACTAAATATTGCTAAATCGACGGAACCGC 371494 | | || |||||| || | |||||| | ||| || || | ||| || ||| | Sbjct 441 CCAAAATAGAAGAAGCTCCAGAAAGATGAAGCGCAAAAATAGCGAGATCTACAGAAGGTC 500 Query 371495 CGGAGTGAGCTACAATAGAACTTAACGGCGGGTAAACTGTTCAGCCGGT 371543 | ||||| |||||||||| || || ||||||||||| || || || Sbjct 501 CACTATGAGCCTCAATAGAACTCAAAGGAGGGTAAACTGTCCAACCAGT 549 >seq1811 Length=963003 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| ||| | || | || || Sbjct 705994 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 706053 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || ||||| || || || || || |||||||| Sbjct 706054 TCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 706113 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| |||||||| ||||||||||| || || ||||| | ||||| ||| Sbjct 706114 TGGATCTTCTGCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACGTCGAGGGTGATGGTC 706173 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | || || | ||| | ||||| Sbjct 706174 TTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 706205 >seq1824 Length=63427 Score = 114 bits (126), Expect = 3e-20 Identities = 138/188 (73%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| ||||| || || |||| ||||| ||| | || | || || Sbjct 54727 AGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCC 54786 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || ||||||||||| || ||||| || || || || || |||||||| Sbjct 54787 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCC 54846 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 || ||||| |||||| ||||| ||||| |||| || || || | ||||| ||| Sbjct 54847 TGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTC 54906 Query 225682 TTGCCCGT 225689 || ||||| Sbjct 54907 TTACCCGT 54914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192502979121818