Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq1679 113 3e-20 >seq1679 Length=19720504 Score = 113 bits (124), Expect = 3e-20 Identities = 265/387 (68%), Gaps = 21/387 (5%) Strand=Plus/Minus Query 1204 CATGGCACTTCACCCGTGCCACATCATGTTC---CAGCTGTACGTCGTCGACGGCCG-GC 1259 |||||| || | || |||||||| |||| ||| | ||||| ||| | || || || Sbjct 7098524 CATGGCCCTGCCGCCCTGCCACAT---GTTCGCGCAGTTTTACGT-GTCCAAGGGCGAGC 7098469 Query 1260 TCTCGCTGCAGGTCTACCAGCGCAGCGCGGACATGTTCCTCGGTGTGCCGTTCAATATCG 1319 ||||| || | |||||||| | ||||| ||| || ||||| ||||| || | Sbjct 7098468 TCTCGTGCCAAATGTACCAGCGGTCGGGCGACATCGGCCTGGGCGTGCCCTTCAACATTG 7098409 Query 1320 CCTCGTACGCGCTCCTCGCGCACATGTTCGCGCAGCAGGCCGGCCTGCGGGTGGGTGAGC 1379 ||||||||||||| ||| |||| || |||| || |||||||||| | || ||| Sbjct 7098408 CCTCGTACGCGCTTCTCACGCATCTGCTCGCAAAGTGCACCGGCCTGCGCGCCGGGGAGT 7098349 Query 1380 TGATCTGGACCGGCGGCGACTGCCACATCTACAACAACCACGTCGACCAGGCGCTGATG- 1438 | ||| | ||||||||||||||| ||||| |||||||||| || | || | | Sbjct 7098348 TCATCCACGTCATCGGCGACTGCCACATTTACAAAAACCACGTCG---AGCCCCTCAAGG 7098292 Query 1439 --CAGCTCCGCCGACGA-CCGCGGCCCTACCCGAGGCTC--GTGCTACACC-AC-GCGCC 1491 ||||| ||| ||| ||||| |||| ||| | |||| | | ||||| || | || Sbjct 7098291 AACAGCTTAACCG-CGAGCCGCGCCCCTTCCCCAAGCTCAAGATCAACACCGACAACACC 7098233 Query 1492 GTCGATCTTCGACTACCGGTACGAGCACATCCACCTCGTGAACTACGACCCGCACCCGTC 1551 | | ||| || || | ||||||| || || | || ||| ||| | || ||| | | Sbjct 7098232 GAC-ATCGACGGCTTCAAGTACGAGGACCTCGAACTTGTGGGGTACAAGCCCCACAAGAC 7098174 Query 1552 GATCAAGGCGCCGGTGGCCGTCTGATG 1578 |||||| | || |||||||||| Sbjct 7098173 CATCAAGATGGACATGTCCGTCTGATG 7098147 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296124533994147