Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq1824 156 9e-33 seq1811 156 9e-33 >seq1824 Length=63427 Score = 156 bits (172), Expect = 9e-33 Identities = 169/224 (75%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 || || || ||||| || || || || | ||| || || |||||||||||||| Sbjct 54712 CCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 54771 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | || ||||| ||| || Sbjct 54772 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGG 54831 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||||||||| || ||||| | || ||| | ||||| |||||||| | ||||| Sbjct 54832 ATGCCCTCCTTGTCCTGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTCGACA 54891 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 ||||| ||||| ||||||||||| | ||||| ||||| ||||| Sbjct 54892 TCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq1811 Length=963003 Score = 156 bits (172), Expect = 9e-33 Identities = 173/228 (76%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||||||||| || || || | ||| || || |||||||||||||| Sbjct 705979 CCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTG 706038 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 ||||||||||| ||||| || || || ||||| ||||| | ||| ||||| ||| || Sbjct 706039 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATCAGGGGGG 706098 Query 282993 ATACCCTCCTTGTCTTGGATCTT-TGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| ||| || ||| | ||||| ||||| | || || Sbjct 706099 ATGCCCTCCTTGTCCTGGATCTTCTGC-TTCACGTTCTCGATGGTGTCGCTGGGCTCAAC 706157 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| ||||| || || | ||||| ||||| |||||||| Sbjct 706158 GTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCAT 706205 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046714429243938