Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq1811 145 5e-30 seq1824 120 2e-22 >seq1811 Length=963003 Score = 145 bits (160), Expect = 5e-30 Identities = 177/239 (74%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 44104 TTTCATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTA 44163 || || ||| || | ||| | | ||| ||||| || ||| |||||| ||||||||||| Sbjct 705972 TTACAGTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTA 706031 Query 44164 ATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATC 44223 ||| ||| ||| |||| || |||||||| ||||| ||||| | |||||| ||||| Sbjct 706032 GTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGTTGATC 706091 Query 44224 TGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGG 44282 | || | || ||||| ||| |||||||||||| | |||| | ||||||||| || Sbjct 706092 AGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCGCTGG 706150 Query 44283 ATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATGATG 44341 || || || | || || ||||| || ||||| ||||| |||||||| |||||| || Sbjct 706151 GCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCTGCATGGTG 706209 >seq1824 Length=63427 Score = 120 bits (132), Expect = 2e-22 Identities = 153/208 (74%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||| ||||| || ||| |||||| ||||||||||| ||| ||| ||| |||| || Sbjct 54729 CACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 54788 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 |||||||| ||||| ||||| | ||||| ||||| | || | || ||||| ||| Sbjct 54789 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTG 54848 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| |||| | |||| | || ||||| | || || || || | || || |||| Sbjct 54849 AATCTTGGACTTC-ACGTTCTCGATCGTGTCCGAGGGCTCGACATCGAGGGTGATGGTCT 54907 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTG 44334 | |||||||||||||| |||||||| || Sbjct 54908 TACCCGTGAGGGTCTTGACGAAGATCTG 54935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359982296503599