Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aurantiochytrium_20sp._20T66_20[genbank_20GCA_5F001462505.1_202015- 12-09] 1,847 sequences; 43,429,441 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq1811 159 3e-34 seq1824 147 2e-30 seq323 102 8e-17 seq1679 84.2 2e-11 >seq1811 Length=963003 Score = 159 bits (176), Expect = 3e-34 Identities = 184/245 (75%), Gaps = 2/245 (1%) Strand=Plus/Plus Query 41620 TCATCGTACATCACCG-CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCT 41678 |||| |||| | || | || ||||| || || | ||| || || || ||| |||||||| Sbjct 705963 TCATGGTACTT-ACAGTCCACCGCGCAGGCGAAGCACGAGGTGGAGGGTGGACTCCTTCT 706021 Query 41679 GAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGC 41738 | ||||| |||||| ||| ||||| |||| |||||||||||||||||||| || || | Sbjct 706022 GGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGAC 706081 Query 41739 GCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG 41798 ||||||| || | ||| | || |||||||||| ||| || ||||||| | | | Sbjct 706082 GCTGTTGATCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGG 706141 Query 41799 TGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCT 41858 ||||||| | ||| || || | || || || || || || |||||||| ||||| |||| Sbjct 706142 TGTCGCTGGGCTCAACGTCGAGGGTGATGGTCTTGCCGGTGAGCGTCTTGACGAAGATCT 706201 Query 41859 GCATG 41863 ||||| Sbjct 706202 GCATG 706206 >seq1824 Length=63427 Score = 147 bits (162), Expect = 2e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 41633 CCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCG 41692 ||||||||||| || || | ||| || || || ||| ||||||||| ||||| |||||| Sbjct 54709 CCGCCGCCGCGGAGGCGGAGCACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 54768 Query 41693 GAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCG 41752 ||| ||||| |||| |||||||||||||||||||| || ||||||||||| || | | Sbjct 54769 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGATCAGGG 54828 Query 41753 GGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTC 41811 || | || |||||||||| ||| | || | ||||| | | ||||| | ||| Sbjct 54829 GGGATGCCCTCCTTGTCC-TGAATCTTGGACTTCACGTTCTCGATCGTGTCCGAGGGCTC 54887 Query 41812 CACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTG 41859 || || | || || || |||||||| || ||||| ||||| ||||| Sbjct 54888 GACATCGAGGGTGATGGTCTTACCCGTGAGGGTCTTGACGAAGATCTG 54935 >seq323 Length=717221 Score = 102 bits (112), Expect = 8e-17 Identities = 129/176 (73%), Gaps = 1/176 (1%) Strand=Plus/Plus Query 85780 CCCCGCCGGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTA 85839 |||||| |||| |||| || | || || || || || ||||| | ||| | | Sbjct 624376 CCCCGC-GGGCACCTACGGCCGCGTGGCGCCGCGGTCGGGGCTCGCGTGGAAGAAGCACA 624434 Query 85840 TCGACGTGGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCT 85899 ||||||| ||||| || ||||||||| ||||||||||||||||||| | |||| |||| Sbjct 624435 TCGACGTCGGCGCGGGCGTCATCGACCGCGACTACCGCGGAAACGTCGGCGTCGTGCTCT 624494 Query 85900 TCAACCACGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTC 85955 ||||||||||||| |||| || | ||| | | || |||| | | || ||| || Sbjct 624495 TCAACCACGGCGACGAGGCCCTCGACGTCAAGGTCGGCGACAGGATCGCGCAGCTC 624550 >seq1679 Length=19720504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 75/94 (80%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | ||| || ||||| ||| ||||||||| ||||| || ||| | Sbjct 8510408 CCACCGCGGAGGCGGAGCACGAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAATCGCTG 8510467 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGA 41729 || ||||| |||| ||||||||||||||||||| Sbjct 8510468 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGA 8510501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462293326556400