Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq16 170 2e-37 seq9 127 2e-24 >seq16 Length=966663 Score = 170 bits (188), Expect = 2e-37 Identities = 313/454 (69%), Gaps = 10/454 (2%) Strand=Plus/Minus Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || ||||| ||||| || | |||||||| | | ||| || ||||| || || | Sbjct 489005 AGGCACGCGAAGTCGCAGTGCATGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGAG 488946 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | |||||||| || || ||||| | ||| || | |||| |||||| || || ||| Sbjct 488945 AGGCCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGACCGCGCAGAACGAGCCGGAGAAG 488886 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCG---TCTTTG 17137 || || |||||||||| || || ||||| | || || ||| | | |||| || | Sbjct 488885 AAGATGCCCTCGACGGCCGCGAAGGCGATGATGCGCTCCGCGAAGGACGCGCGGTCCGGG 488826 Query 17138 TTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATG 17197 | || | ||| | || |||||| ||| |||| | | ||| ||| || || ||| Sbjct 488825 T--CGCA-CCAGCGCAGCGCCCACTGGGCCTTTTTGGTCACGCAGGGCATGGTGTCGATG 488769 Query 17198 GCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 ||| | | | | | ||||||| |||| || ||||| |||||||| |||||| Sbjct 488768 GCCGTGAGGCACTCGTGCTTTTCCTTGGCGTCGCGGATGTACGTGTCGATGAGCAGGCTG 488709 Query 17258 TACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCC 17317 || | |||||||| |||||||| ||||| ||||| || ||||| ||||| || || || Sbjct 488708 TAGACCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCG 488649 Query 17318 GCTATTTGAACTTCCACGTAGAATCGTTCCG--CTAGATTTTCGTTCACGATGCCGTCGC 17375 || || || ||| ||| |||| | | || || ||||| |||||||||||| Sbjct 488648 GCCCACTGCACCTCCGTCGCGAA--GTTCTGGGCCAGGTTCTCGTTGACGATGCCGTCGG 488591 Query 17376 TCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 ||| ||||| ||||| | | ||||| ||||| Sbjct 488590 ACGCCGCGAAGAACGCGAGCACGTGCTTGATGAA 488557 >seq9 Length=1602328 Score = 127 bits (140), Expect = 2e-24 Identities = 305/457 (67%), Gaps = 6/457 (1%) Strand=Plus/Plus Query 16956 ACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAA 17015 ||| ||| || ||||| ||||| || | || ||||| | ||| || ||||| || | Sbjct 1478137 ACAGCAGGCACGCGAAGTCGCAGTGCAGCCCTTCGTCCCGCGCGATGAGCTCGTTGGAGA 1478196 Query 17016 ATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAG 17075 | | | ||||||||| || || ||||| | ||| || | ||| ||| || | Sbjct 1478197 AGGAGAGCCCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGACGGCGCAGAAGCTGCCCG 1478256 Query 17076 AAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTT 17135 | ||||| || || ||||| | || || || | || ||||||| | ||| ||||| | Sbjct 1478257 AGAAGAAAATGCCTTCGACTGCGGCGAATGCAAGCAACCGTTCGGTGAACGACGCGTGAT 1478316 Query 17136 T-GTTACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCT 17194 | || | ||| | || |||||| ||| || | | ||| ||| || || Sbjct 1478317 CAGGGTCGCA-CCACCGCAGCGCCCACTGGGCCTTCTCGGCCACGCACGGCATGGTGTCG 1478375 Query 17195 ATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGG 17254 |||||| | | | | | || | ||| |||| || ||||| ||||| || ||| Sbjct 1478376 ATGGCCGTCAGGCACTCGTGCTTCTTCTGGGCGTCGCGGATGTACGTGTCGATCAGGAGG 1478435 Query 17255 CTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCT 17314 ||||| | || ||||| ||||| || ||||| ||||| || ||||| ||||| || || Sbjct 1478436 CTGTATACCTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGCC 1478495 Query 17315 TCCGCTATTTGAACTTCCACGTAGAATCGTTCCG--CTAGATTTTCGTTCACGATGCCGT 17372 || | || || ||| ||| |||| | ||| ||| ||||| |||||||||| Sbjct 1478496 TCGGGCCACTGCACCTCCGTCGCGAA--GTTCTGGGCTAAATTCTCGTTGACGATGCCGT 1478553 Query 17373 CGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || ||| |||||||| |||| | ||||| ||||| Sbjct 1478554 CGGACGCTGCGAAAAATGCCAGCACGTGCTTGATGAA 1478590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537933855800