Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq10 118 9e-22 seq5 109 5e-19 seq6 107 2e-18 seq13 95.1 1e-14 >seq10 Length=1654512 Score = 118 bits (130), Expect = 9e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| |||||| | |||| ||| ||| || || ||||| ||||| | Sbjct 452712 CCGCCGCGCAGCCGGAGCACGAGGTGCAGCGTGCTCTCTTTCTGGATGTTGTAGTCGGAG 452653 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| ||| |||| || | ||||||||| ||| Sbjct 452652 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGGCGTTGCTGGTCCGGGGGG 452593 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| || ||||| | | ||| || || | |||||| Sbjct 452592 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTGTCGATGGTGTCGCTGGGCTCGACG 452533 Query 21129 TCCACGGTAATGGTCTTGCC 21148 || | || ||||||||||| Sbjct 452532 TCGAGCGTGATGGTCTTGCC 452513 Score = 104 bits (114), Expect = 2e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 20984 CTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATA 21043 |||||| || ||||| ||||||| || || || ||||||| ||||| |||||||| | Sbjct 862636 CTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 862695 Query 21044 AATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTG 21103 || || | |||||||||| ||| | ||| |||||||| |||||| || ||||| | Sbjct 862696 GATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 862755 Query 21104 GCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCC 21148 | ||| || || | |||||| || | || ||||||||||| Sbjct 862756 GTCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCC 862800 >seq5 Length=3000003 Score = 109 bits (120), Expect = 5e-19 Identities = 158/222 (71%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 || |||||||| || ||||| ||||| || || || | ||||| ||||| |||||| Sbjct 733106 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 733165 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 || | || || | |||||||||| || | ||| |||||||| |||||| || ||| Sbjct 733166 GCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 733225 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | | ||| || || | |||||| || | || ||||||||||| || | ||| Sbjct 733226 ACGTTGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCCGTGAGCGTC 733285 Query 21159 TTGACAAATATTTGCATTTTGAATCTCTTATAAATGGCGGCG 21200 ||||| || || ||||| || | | || | || ||||||| Sbjct 733286 TTGACGAAGATCTGCATGGTGGCTGTTTTTTGAA-GGCGGCG 733326 >seq6 Length=2755913 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||||| |||||| | || | || ||||||||||| ||||| ||||| Sbjct 2370667 CCGCCGCGCAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 2370726 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| || || || | || || | |||||||||| || Sbjct 2370727 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGCCGCTGCTGGTCCGGCGGG 2370786 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| || ||||| ||||| | | ||| || || | ||||| Sbjct 2370787 ATGCCCTCCTTGTCCTGTATTTTTTGCTTCACGTTGTCGATGGTGTCGCTCGGCTCGACG 2370846 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | || || ||||| || || | || ||||| || |||||||| Sbjct 2370847 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAAATTTGCAT 2370893 >seq13 Length=1338096 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/151 (76%), Gaps = 8/151 (5%) Strand=Plus/Minus Query 23811 GTTGCCCAGGTCGCC-GACGTGTCGCTCCGCGGCGTCGGGCGCGCCGTGTCTCTGGCGGG 23869 |||||| |||||||| | | || ||||| ||||||| ||||||||||| ||| || | Sbjct 327190 GTTGCCGAGGTCGCCCGTCATG-CGCTCGTCGGCGTCCGGCGCGCCGTGGTTCTTGCCGA 327132 Query 23870 TGGGGTTAAAG-TGCTCGCCAGCGGACGTGCAGCCGTTGCTGGTGTCGCCGAATTCGTGC 23928 |||||| ||| ||| |||| ||||||||| ||| | |||| ||||||||| |||| Sbjct 327131 AGGGGTTGAAGATGC-CGCCGGCGGACGTGAGGCCCTGGCTGAAGTCGCCGAAGATGTGC 327073 Query 23929 ACGTGAAAACCGTGCAGCCC----GCGAGGC 23955 ||||| | |||||| | || ||||||| Sbjct 327072 ACGTGGATGCCGTGCTGGCCCGGGGCGAGGC 327042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422253101653460