Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq9 122 8e-23 >seq9 Length=1602328 Score = 122 bits (134), Expect = 8e-23 Identities = 225/322 (70%), Gaps = 16/322 (5%) Strand=Plus/Minus Query 99435 GCCCCAGAGCATGAACACCATCGGGCCGCCCTGCGCGCTCAGGCGGGCCAGCACCGCGTG 99494 |||||||||| ||| || | ||| | || ||||| || ||||| || |||| Sbjct 592919 GCCCCAGAGCGCGAAGACGACCGGTCGCTCCCGCGCGGCGAGCGCGGCCACGACGGCGTC 592860 Query 99495 CACCAGCCGCCCCCAGCCCAGGCTGGCGTGCGAGCCCGGCGCCCCGCTC---CGCACGGT 99551 | ||| ||| ||||||| ||| | ||| || ||||| ||| | ||||| || Sbjct 592859 CGTCAGGCGCTCCCAGCCGCGGCCGCGGTG---GCTGTGCGCCTCGCCCTCGCGCACCGT 592803 Query 99552 GAGCGAGGTGTTGAGCAGCAGCACGCCGCGGCGCGCCCAGGCCTCC-AGGCAGCCGTGCT 99610 |||| |||||||||||| |||||||| || ||||||| ||||| ||| |||| | Sbjct 592802 CAGCGCGGTGTTGAGCAGGAGCACGCCCTGGTCCGCCCAG-CCTCCGAGGTCGCCGC-CG 592745 Query 99611 GCGGCCGCGGGGTCCCGGGGAAGTTCTTCTGCACGGCCGCGTAG-ATGTTCTGGAGGCTG 99669 || | ||||| | ||| || || || || | |||| || | ||| ||||| Sbjct 592744 GCCGGCGCGGCG--CCGTGG----TCCTCGGCGCACTCGCGCAGCACGTTGCGGAGGGAC 592691 Query 99670 GGCGGGATCGGAACGCCGCGGTTCACGCTGAAGGCCAGGCCGTGGGCCTGCCCGTGGCTG 99729 || ||||| | ||||| | ||||||||||| ||||||| |||||| ||| ||| | Sbjct 592690 GGGGGGATGGCGCAGCCGCCGGAGACGCTGAAGGCGAGGCCGTTGGCCTGGCCGGGGCCG 592631 Query 99730 TGGTAGGGGTCCTGGCCCAGGA 99751 ||||| |||||||| |||| || Sbjct 592630 TGGTACGGGTCCTGCCCCACGA 592609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440892669180600