Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq9 152 4e-32 >seq9 Length=1602328 Score = 152 bits (168), Expect = 4e-32 Identities = 191/260 (73%), Gaps = 3/260 (1%) Strand=Plus/Minus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 ||||||||||||||||| ||||| ||||| | ||| | ||| ||| ||||| Sbjct 1246408 ACGCCCGTGGACCCGAAGCCGCCGGCGCCGCGGGTCGTCGCCGGCAGCTCCGCGACCTCC 1246349 Query 5561 TCCACATCGGGGA--ACGCAGCGCG-CTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTC 5617 || || |||| | | | | | |||| ||| ||||| || | |||||||| | Sbjct 1246348 TCGACCTCGGCGTCGAGGTGGACCTTCTCGAGGATGAGCTGGGCGACGCGGTCGCCGGGG 1246289 Query 5618 TTTACCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 | |||||||| || || |||| |||||| ||||| ||||| ||| |||||||||| Sbjct 1246288 CTCACCTCGAAGTCCGCGTCGCCGTGGTTGAAGAGCACGACGCCGACGGCGCCGCGGTAG 1246229 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 |||||||| | ||||||||||| ||||||| ||| | ||||||||| |||||||| || Sbjct 1246228 TCGGCGTCGACGACGCCCGCGCCGACGTCGACGAACTTCTTGACCGCGAGGCCGGACCGC 1246169 Query 5738 GGAGCCACGCGGCCGTAGCA 5757 || || | ||| ||||||| Sbjct 1246168 GGCGCGATGCGCGCGTAGCA 1246149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430048189073720