Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq240 96.9 3e-15 seq34 96.9 3e-15 seq26 93.3 4e-14 seq5 91.5 1e-13 seq28 84.2 2e-11 seq10 84.2 2e-11 >seq240 Length=9970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | |||||| ||||| || || Sbjct 1480 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 1421 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| || || || ||||| | || || ||| Sbjct 1420 GCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 1361 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | || ||||| | |||||||||||| || || || || Sbjct 1360 ACGTTGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGTC 1301 Query 94991 TTCACAAAGATCTGCATGCTT 95011 || || |||||||||||| || Sbjct 1300 TTGACGAAGATCTGCATGATT 1280 >seq34 Length=376640 Score = 96.9 bits (106), Expect = 3e-15 Identities = 142/201 (71%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | |||||| ||||| || || Sbjct 72741 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 72800 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| || || || ||||| | || || ||| Sbjct 72801 GCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 72860 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | || ||||| | |||||||||||| || || || || Sbjct 72861 ACGTTGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGTC 72920 Query 94991 TTCACAAAGATCTGCATGCTT 95011 || || |||||||||||| || Sbjct 72921 TTGACGAAGATCTGCATGATT 72941 >seq26 Length=549629 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||| | ||| | || || ||||| || | ||| || ||||| | ||| | ||||| Sbjct 459819 CACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTC 459878 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| |||| ||||| || || || || || || ||||| | Sbjct 459879 GAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTG 459938 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| | ||| ||||| | | |||||||| | |||||| || || Sbjct 459939 GATCTTCTGCTTCACGTTGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTT 459998 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 || || || || || || |||||||||||| Sbjct 459999 CCCGGTGAGCGTCTTGACGAAGATCTGCATG 460029 >seq5 Length=3000003 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | |||||| ||||| || || Sbjct 733106 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCC 733165 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || ||||| || || || ||||| | || || ||| Sbjct 733166 GCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 733225 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | |||||||| | ||||||||| || || || || || Sbjct 733226 ACGTTGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCCGTGAGCGTC 733285 Query 94991 TTCACAAAGATCTGCATG 95008 || || |||||||||||| Sbjct 733286 TTGACGAAGATCTGCATG 733303 >seq28 Length=462849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | ||||| ||||| || || Sbjct 34742 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 34683 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || || || || || || ||||| | || || ||| Sbjct 34682 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 34623 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | |||||||| | |||||| || || || || || || Sbjct 34622 ACGTTGTCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTCCCCGTGAGGGTC 34563 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 34562 TTGACGAAGATCTGCATGC 34544 >seq10 Length=1654512 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | ||||| ||||| || || Sbjct 861947 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 862006 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || || || || || || ||||| | || || ||| Sbjct 862007 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 862066 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | |||||||| | |||||| || || || || || || Sbjct 862067 ACGTTGTCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTC 862126 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 862127 TTGACGAAGATCTGCATGC 862145 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | ||||| ||||| || || Sbjct 862175 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 862234 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || || || || || || ||||| | || || ||| Sbjct 862235 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 862294 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | |||||||| | |||||| || || || || || || Sbjct 862295 ACGTTGTCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTC 862354 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 862355 TTGACGAAGATCTGCATGC 862373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || || ||||| || | ||| || ||||| | ||| | ||||| ||||| || || Sbjct 862403 GTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCC 862462 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 | ||||| | | ||||| || || || || || || ||||| | || || ||| Sbjct 862463 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 862522 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | ||| ||||| | | | |||||||| | |||||| || || || || || || Sbjct 862523 ACGTTGTCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTC 862582 Query 94991 TTCACAAAGATCTGCATGC 95009 || || ||||||||||||| Sbjct 862583 TTGACGAAGATCTGCATGC 862601 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448284559686600