Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq9 93.3 5e-14 >seq9 Length=1602328 Score = 93.3 bits (102), Expect = 5e-14 Identities = 299/458 (65%), Gaps = 11/458 (2%) Strand=Plus/Plus Query 33296 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAA 33355 ||| || || ||||| ||||||||||| || ||||| | || || |||||||| | Sbjct 1478137 ACAGCAGGCACGCGAAGTCGCAGTGCAGCCCTTCGTCCCGCGCGATGAGCTCGTTGGAGA 1478196 Query 33356 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAG 33415 | | ||| |||||||| ||||| ||||| || ||||| || | || ||| || | Sbjct 1478197 AGGAGAGCCCGGGCATGAGGCCCCGCTTCTTGAGCCAGAAGACGGCGCAGAAGCTGCCCG 1478256 Query 33416 AAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC-TG 33474 | ||||| || ||||| ||||| || || |||| | | || | | || ||| || Sbjct 1478257 AGAAGAAAATGCCTTCGACTGCGGCGAATGCAAGCA--ACCGTTCGGTGAACGACGCGTG 1478314 Query 33475 -TCA---TGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 ||| | |||| | ||||| | |||||||| || || ||||| || || Sbjct 1478315 ATCAGGGTCGCACCACCGCAGCGCCCACTGGGCCTTCTCGGCCACGCACGGCATGGTGTC 1478374 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| | | | | || || | | || | || || ||||||| || Sbjct 1478375 GATGGCCGTCAGGCACTCGTGCTTCTTCTGGGCGTCGCGGATGTACGTGTCGATCAGGAG 1478434 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 || || | || || || |||||||| ||||| ||||| || |||||||| || | || Sbjct 1478435 GCTGTATACCTCAGAGTGGATGTTTTCGATGGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1478494 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTC--CGCCAAATTTTCATTCACTATTCCG 33708 ||||| ||| || || || || |||| || ||||| || || || || ||| Sbjct 1478495 CTCGGGCCACTGCACCTCCGTCGCGAA--GTTCTGGGCTAAATTCTCGTTGACGATGCCG 1478552 Query 33709 TCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA 33746 || ||||| ||||| |||| || || || || || Sbjct 1478553 TCGGACGCTGCGAAAAATGCCAGCACGTGCTTGATGAA 1478590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622937972594600