Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq28 105 6e-18 seq6 98.7 9e-16 seq2 87.8 2e-12 >seq28 Length=462849 Score = 105 bits (116), Expect = 6e-18 Identities = 136/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 24000 TTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATC 24059 || || ||||| | || || || |||| || |||| |||||| ||| |||||||||| Sbjct 33998 TTCGTCAAAACGCTCACCGGTAAGACGATCACGCTCGACGTCGAGCCCAGCGACACCATC 34057 Query 24060 GAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTG 24119 || | || || || ||||| ||||| || ||||| ||||| ||||| ||| | || Sbjct 34058 GATAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTC 34117 Query 24120 ATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAA 24179 |||| || |||||||| ||||| || | | | | ||||||| || ||||| || || Sbjct 34118 ATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAG 34177 Query 24180 GAATCTAC 24187 || || || Sbjct 34178 GAGTCGAC 34185 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| || |||| || ||| || ||||||||||| | || || || ||||| | Sbjct 34352 CGATCACGCTCGACGTGGAGCCCTCGGACACCATCGACAACGTGAAGCAGAAGATCCAGG 34411 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| ||||| ||||| ||| | || |||| || |||||||| ||||| | Sbjct 34412 ACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTCATTTTCGCGGGCAAGCAGCTCGAGG 34471 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | ||||||| || ||||| || || || || || Sbjct 34472 ACGGCCGCACGCTCAGCGACTACAACATCCAGAAGGAGTCGAC 34514 >seq6 Length=2755913 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || |||| || |||| |||||| | | | Sbjct 2370893 ATGCAAATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCGAGC 2370834 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || ||||| || ||||| || || || || Sbjct 2370833 GACACCATCGACAACGTGAAGCAAAAAATACAGGACAAGGAGGGCATCCCGCCGGACCAG 2370774 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||| ||||| ||||| || | | | | | ||||||| || ||| Sbjct 2370773 CAGCGGCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAAC 2370714 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || || || Sbjct 2370713 ATCCAAAAGGAGTCGAC 2370697 Score = 96.9 bits (106), Expect = 3e-15 Identities = 119/163 (73%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| || |||| |||||| ||| |||||||||||| | || || ||||| || | Sbjct 2371087 CGATCACGCTCGACGTCGAGCCCAGCGACACCATCGACAACGTGAAGCAAAAAATCCAAG 2371028 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| || || || || ||| | || |||| | ||| ||||| ||||| | Sbjct 2371027 ACAAGGAGGGCATCCCGCCGGACCAGCAGCGGCTCATTTTTGCCGGGAAGCAGCTCGAGG 2370968 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | | | ||||| || ||||| |||||||| || || Sbjct 2370967 ACGGCCGGACCCTGAGCGACTACAACATCCAAAAAGAGTCGAC 2370925 >seq2 Length=3465789 Score = 87.8 bits (96), Expect = 2e-12 Identities = 117/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 24025 CGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCG 24084 |||| || |||| |||||| ||| |||||||||||| | || || || ||||| | Sbjct 661001 CGATCACGCTCGATGTCGAGCCCAGCGACACCATCGACAACGTGAAGCAGAAGATCCAGG 660942 Query 24085 ACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAG 24144 |||| || ||||| || || || || ||| | || || | || ||| ||||| ||||| | Sbjct 660941 ACAAGGAGGGCATCCCCCCGGACCAGCAGCGCCTCATCTTCGCCGGGAAGCAGCTCGAGG 660882 Query 24145 ATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTAC 24187 | | | | | ||||||| || ||||| || || || || || Sbjct 660881 ACGGCCGCACGCTCAGCGACTACAACATCCAGAAGGAGTCGAC 660839 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24026 GATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGA 24085 ||| || |||| |||||| ||| |||||||||||| | || || || ||||| || Sbjct 3141253 GATCACGCTCGACGTCGAGCCCAGCGACACCATCGACAACGTGAAGCAGAAGATCCAGGA 3141312 Query 24086 CAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGA 24145 ||| || ||||| || || || || ||| || |||| | || || ||||| ||||| || Sbjct 3141313 CAAGGAGGGCATCCCCCCGGACCAGCAGCGATTGATCTTCGCGGGGAAGCAGCTCGAGGA 3141372 Query 24146 TGACAGAAACGTCAGCGATTATAACATTCAAAAAGA 24181 | | | | ||||||| || ||||| || || || Sbjct 3141373 CGGCCGCACGCTCAGCGACTACAACATCCAGAAGGA 3141408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429929790783675