Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq4 91.5 2e-13 seq9 87.8 2e-12 >seq4 Length=3024044 Score = 91.5 bits (100), Expect = 2e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 126178 TTGGTGTAAATGTAGCGGGGAGCT-GCCGAATCCTTGCCTCCCTCCAACCGCGTGCCAAA 126236 || ||| | |||||||| | |||| || | |||||||| ||| | |||||||| || Sbjct 316098 TTCGTGAAGATGTAGCGCG-AGCTCGCGGCGTCCTTGCCGCCCATGATGCGCGTGCCGAA 316156 Query 126237 CTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGTCCTGCGCAAACTT 126296 ||| || | ||| || || | ||| ||||| | ||||||||||||||||| | Sbjct 316157 CTGGCCCGCGGGCGTCAGCAGGTTCACGTTGTTCGAGCCCACAAAGTCCTGCGCCATGCC 316216 Query 126297 GACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCTGCTCGGCCACGTA 126356 ||| || || | ||| || ||||||||| | |||| | | ||||| | |||||| Sbjct 316217 GACGATCGTGCCCGTGAGGCTCATCTCGCCGTGGTGGTAGGCCGCGTGCTCCGACACGTA 316276 Query 126357 GCCGCTCAGCTGCGCAACCTTGAT 126380 ||| ||||| || |||||||| Sbjct 316277 GCCCGCGAGCTGGGCGACCTTGAT 316300 >seq9 Length=1602328 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 50810 GTCCACTACGTGCCCGTCCGCCCCGACCTGTCGGACCTGTTTGACCGCATCGAGTGGTGC 50869 ||| || |||||||||| ||| | |||||||||||||| || ||||||||||||||| Sbjct 1336162 GTCGACCACGTGCCCGTGCGCGCGGACCTGTCGGACCTCGCGGAGCGCATCGAGTGGTGC 1336103 Query 50870 CGCGCCAACGACGCCCAGTGCCGGGCAATGGCTGAAAACGC 50910 ||||| ||||||||| ||| || ||||| | ||||| Sbjct 1336102 CGCGCGAACGACGCCGCCTGCGAAGCCATGGCGGCCAACGC 1336062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611382943756000