Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 114 1e-20 seq10 102 7e-17 seq28 100 2e-16 seq458 91.5 1e-13 seq9 91.5 1e-13 seq2 91.5 1e-13 seq240 89.7 4e-13 seq34 89.7 4e-13 seq26 89.7 4e-13 seq39 86.0 5e-12 seq5 86.0 5e-12 >seq6 Length=2755913 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 |||||||||||| || || || | || || || ||| |||| || || || || | | Sbjct 2370894 GATGCAAATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCGAG 2370835 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 ||| ||| | ||| | | || |||||||| || ||||||||||| || || || || || Sbjct 2370834 CGACACCATCGACAACGTGAAGCAAAAAATACAGGACAAGGAGGGCATCCCGCCGGACCA 2370775 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || ||||| ||||| || ||| | ||||| ||| ||| || ||| ||||| Sbjct 2370774 GCAGCGGCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAA 2370715 Query 22398 CATTCAAAAAGAATCCAC 22415 ||| ||||| || || || Sbjct 2370714 CATCCAAAAGGAGTCGAC 2370697 Score = 109 bits (120), Expect = 5e-19 Identities = 141/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || || || || || | || || || ||| |||| || || || || ||| ||| Sbjct 2371119 GCAGATCTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCCAGCGA 2371060 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | ||| | | || |||||||| |||||||||||||| || || || || || || Sbjct 2371059 CACCATCGACAACGTGAAGCAAAAAATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCA 2371000 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || |||||||| || ||| | ||||| ||| ||| | ||| |||||||| Sbjct 2370999 GCGGCTCATTTTTGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTGAGCGACTACAACAT 2370940 Query 22401 TCAAAAAGAATCCAC 22415 |||||||| || || Sbjct 2370939 CCAAAAAGAGTCGAC 2370925 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/136 (76%), Gaps = 8/136 (6%) Strand=Plus/Plus Query 129737 TGTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 ||||||||||||| |||| ||||| || || | || || |||||||||||||| || Sbjct 404398 TGTACTCGACAATCTCGGTGCACAGGTTCGACGACTTG--ATCGTGCCCAAATGCTTCTG 404455 Query 129795 ATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACT 129852 || |||| || |||||| || || ||||| | |||||| ||||||||||| ||||| Sbjct 404456 GTTCGACTTGTC--GTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCGACC 404513 Query 129853 TGCGTTTCGACAATGG 129868 || | |||| |||| Sbjct 404514 TGGCTGTCGAGGATGG 404529 >seq10 Length=1654512 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 22256 TCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACA 22315 |||| || || || || ||| ||| ||| | ||| | | || || || || || |||| Sbjct 452523 TCACGCTCGACGTCGAGCCCAGCGACACCATCGACAACGTGAAGCAGAAGATCCAGGACA 452582 Query 22316 AGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATC 22375 ||||||| || || || || || ||||| || || ||||| ||||| ||| | ||||| Sbjct 452583 AGGAGGGCATCCCCCCGGACCAGCAACGCCTCATTTTTGCTGGCAAGCAGCTCGAGGACG 452642 Query 22376 ACCGCACCGTCTCCGATTACAACATTCAAAAAGA 22409 ||||||| ||||||| |||||||| || ||||| Sbjct 452643 GCCGCACCCTCTCCGACTACAACATCCAGAAAGA 452676 >seq28 Length=462849 Score = 100 bits (110), Expect = 2e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| || || || ||||| | |||||||| ||| |||| || || || || ||| ||| Sbjct 33991 GCAGATCTTCGTCAAAACGCTCACCGGTAAGACGATCACGCTCGACGTCGAGCCCAGCGA 34050 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | || | | || || || || || ||||||||||| || || || ||||| || Sbjct 34051 CACCATCGATAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCA 34110 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || || || ||||| ||| | ||||| |||||| || ||| |||||||| Sbjct 34111 GCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 34170 Query 22401 TCAAAAAGAATCCAC 22415 || || || || || Sbjct 34171 CCAGAAGGAGTCGAC 34185 Score = 86.0 bits (94), Expect = 5e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 22246 GGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAAAAA 22305 || || ||| |||| || || ||||| || | || ||| | ||| | | || || || Sbjct 34345 GGCAAGACGATCACGCTCGACGTGGAGCCCTCGGACACCATCGACAACGTGAAGCAGAAG 34404 Query 22306 ATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAG 22365 || || ||||||||||| || || || ||||| || || || || || || ||||| ||| Sbjct 34405 ATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCAGCGCCTCATTTTCGCGGGCAAGCAG 34464 Query 22366 TTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 | ||||| |||||| || ||| |||||||| || || || || || Sbjct 34465 CTCGAGGACGGCCGCACGCTCAGCGACTACAACATCCAGAAGGAGTCGAC 34514 >seq458 Length=6571 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/136 (76%), Gaps = 8/136 (6%) Strand=Plus/Plus Query 129737 TGTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 ||||||||||||| |||| ||||| || || | || || |||||||||||||| || Sbjct 223 TGTACTCGACAATCTCGGTGCACAGGTTCGACGACTTG--ATCGTGCCCAAATGCTTCTG 280 Query 129795 ATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACT 129852 || |||| || |||||| || || ||||| | |||||| ||||||||||| ||||| Sbjct 281 GTTCGACTTGTC--GTTGCAGGCGTCCTTGTAGAGCATGTAAGGCGTGCCCGTCTCGACC 338 Query 129853 TGCGTTTCGACAATGG 129868 || | |||| |||| Sbjct 339 TGGCTGTCGAGGATGG 354 >seq9 Length=1602328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/136 (76%), Gaps = 8/136 (6%) Strand=Plus/Plus Query 129737 TGTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 ||||||||||||| |||| ||||| || || | || || |||||||||||||| || Sbjct 1503689 TGTACTCGACAATCTCGGTGCACAGGTTCGACGACTTG--ATCGTGCCCAAATGCTTCTG 1503746 Query 129795 ATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACT 129852 || |||| || |||||| || || ||||| | |||||| ||||||||||| ||||| Sbjct 1503747 GTTCGACTTGTC--GTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCGACC 1503804 Query 129853 TGCGTTTCGACAATGG 129868 || | |||| |||| Sbjct 1503805 TGGCTGTCGAGGATGG 1503820 >seq2 Length=3465789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 22221 GCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGA 22280 ||| ||||| || || || | || || || ||| |||| || || || || ||| ||| Sbjct 661033 GCAGATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGATGTCGAGCCCAGCGA 660974 Query 22281 TACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACA 22340 ||| | ||| | | || || || || || ||||||||||| || || || || || || Sbjct 660973 CACCATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 660914 Query 22341 ACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACAT 22400 || || || || ||||| || ||| | ||||| |||||| || ||| |||||||| Sbjct 660913 GCGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 660854 Query 22401 TCAAAAAGAATCCAC 22415 || || || || || Sbjct 660853 CCAGAAGGAGTCGAC 660839 >seq240 Length=9970 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || ||||| |||| || || ||||| || | Sbjct 1284 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAAACCATCACGCTCGACGTGGAGCCCTCG 1343 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| || || || || || Sbjct 1344 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 1403 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| || ||| |||||| Sbjct 1404 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAAC 1463 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 1464 ATCCAGAAGGAGTCGAC 1480 >seq34 Length=376640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || ||||| |||| || || ||||| || | Sbjct 72937 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAAACCATCACGCTCGACGTGGAGCCCTCG 72878 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| || || || || || Sbjct 72877 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 72818 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| || ||| |||||| Sbjct 72817 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAAC 72758 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 72757 ATCCAGAAGGAGTCGAC 72741 >seq26 Length=549629 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || ||| |||| || || || || ||| | Sbjct 460028 ATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTCGACGTCGAGCCCAGC 459969 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| || || || || || Sbjct 459968 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 459909 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || | || || |||||||| ||| | ||||| |||||| || ||| |||||| Sbjct 459908 CAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 459849 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 459848 ATCCAGAAGGAGTCGAC 459832 >seq39 Length=313712 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/136 (76%), Gaps = 8/136 (6%) Strand=Plus/Minus Query 129737 TGTACTCGACAATTTCGGCGCACAAATT--ACTATTTTTAATGGTGCCCAAATGCTTTTG 129794 ||||||||||||| |||| ||||| || || | || || |||||||||||||| || Sbjct 144062 TGTACTCGACAATCTCGGTGCACAGGTTCGACGACTTG--ATCGTGCCCAAATGCTTCTG 144005 Query 129795 ATT--ACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACT 129852 || |||| || |||||| || || ||||| | |||||| ||||||||||| | ||| Sbjct 144004 GTTCGACTTGTC--GTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCCGTCTTGACC 143947 Query 129853 TGCGTTTCGACAATGG 129868 || | |||| |||| Sbjct 143946 TGGCTGTCGAGGATGG 143931 >seq5 Length=3000003 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| || || || || ||| | Sbjct 733302 ATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACGCTCGACGTCGAGCCCAGC 733243 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | | || || || || || ||||||||||| || || || || || Sbjct 733242 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 733183 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || || || || || || ||||| ||| | |||||| |||||| || ||| |||||| Sbjct 733182 CAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAAC 733123 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 733122 ATCCAGAAGGAGTCGAC 733106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419721938209525