Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq16 131 3e-25 seq4 129 1e-24 seq21 98.7 2e-15 seq9 91.5 3e-13 seq95 87.8 4e-12 seq14 87.8 4e-12 seq6 87.8 4e-12 >seq16 Length=966663 Score = 131 bits (144), Expect = 3e-25 Identities = 537/828 (65%), Gaps = 29/828 (4%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | |||||||| || ||||| |||||||| ||||||||||||| || Sbjct 489269 TCGAAGAAGTTCGTCTTGCCCTGGAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTCGTC 489210 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 || | ||| |||| || ||| || || | || || ||||| || ||||| | Sbjct 489209 GCTTCGTAGAGCTTCGGGCAGCCGAGCGCGAGGAGGAGCCGGTCCGCGCAGAACTCGATG 489150 Query 251683 TACTGTCCCATCAGTTCA-GAGTTCATGCCAATCATA-CGACAAGGAATTGCCTCACAGA 251740 ||||| | ||| || | ||||||||||| || | | || || | || || Sbjct 489149 TACTGGCACATG-GTCCGCGAGTTCATGCCGATGAGCTCCACG-GGCAGCGCGGAGACGA 489092 Query 251741 TGAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACA 251800 ||| ||||| ||| ||| || || || | | | || || | | | | | | Sbjct 489091 CGAACTCCTTCTCGATGGTCACCGCGTCGCCGATGAGCGCGTTGATCGTCTCGACGGGGA 489032 Query 251801 GCTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTG--GTGCAGACCCTCGT 251857 |||||||| ||||| ||||| ||||| | ||| || || | ||||| ||||||| Sbjct 489031 GCTTGTTCCGGAGCTTCGAGTAGAGGAGGCACGCGAA---GTCGCAGTGCATGCCCTCGT 488975 Query 251858 CGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCC 251917 |||| ||||| ||||||||| | ||||| ||||| | || || ||| |||||| Sbjct 488974 CGCGGGAGATGAGCTCGTTGGAGAAGGAGAGGCCGGGCATGAGGCCCCGCTTCTTGAGCC 488915 Query 251918 AGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAA 251977 |||||| ||||| || || || ||||| | | |||||||| | | | || | | Sbjct 488914 AGAAGACCGCGCAGAACGAGCCGGAGAAGAAGATGCCCTCGACGGCCGCGAAGGCGATGA 488855 Query 251978 GGCGCTCAGCAAACGAC---TTGTCCTG--CGACAAGAACTTCTGTGCCCATGCTGCCTT 252032 |||||| || || ||| |||| | || || | | | | ||||| ||||| Sbjct 488854 TGCGCTCCGCGAAGGACGCGCGGTCCGGGTCG-CACCAGC-GCAGCGCCCACTGGGCCTT 488797 Query 252033 CTTTCCAACCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCAT---C 252089 || || ||| || || ||||| | | ||| | | ||| | | | Sbjct 488796 TTTGGTCACGCAGGGCATGGTGTCGATGG---CCGTGAGGCACTCGTGCTTTTCCTTGGC 488740 Query 252090 GTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAA 252149 ||| |||| || || | || || ||| | ||| || |||||| ||| || Sbjct 488739 GTCGCGGATGTACGTGTCGATGAGCAGGCTGTAGACCTCGGAGTGGATGTTCTCGATGGC 488680 Query 252150 CATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTG-ACTTCCGTGGAAAAGTTGT 252208 |||||| | | ||||| ||||| || | || || ||||| | ||||| | Sbjct 488679 GATCTGGAAGCCGTAGAAGCAGCGCGC-CTCGGCCCACTGCACCTCCGTCGCGAAGTTCT 488621 Query 252209 TTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGA 252268 || | |||||| | || ||||| ||| | || ||||| | || | | ||||| Sbjct 488620 GGGCCAGGTTCTCGTTGACGATGCCGTCGGACGCCGCGAAGAACGCGAGCACGTGCTTGA 488561 Query 252269 TGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAG 252328 ||||||| ||||| | |||||||||||| | |||||| ||||| || ||||| Sbjct 488560 TGAAGTGGCGCTCCTTGTCGTTGAGCTTCTGGTCCCAGTCCTTGATGTCGTG--GCAGAG 488503 Query 252329 G--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT 252374 | | || ||| |||||||||| | | | |||||||||||||||| Sbjct 488502 GTCGATCTCCTCCGCCGTCCAGAACGACGCCTCCGCCTTCTTGTACAT 488455 >seq4 Length=3024044 Score = 129 bits (142), Expect = 1e-24 Identities = 403/617 (65%), Gaps = 24/617 (4%) Strand=Plus/Minus Query 218401 GGCGAGCTCATCGACCGATCTTTC---AACAAGTCTCGTCCTGATGAGCGCAAGACCTGG 218457 ||||| ||||||||| | ||| || ||| | |||| || || |||||||||||| Sbjct 316552 GGCGACCTCATCGACATGGCGTTCTCGAAGAAG-CGCGTC--GAGGACCGCAAGACCTGG 316496 Query 218458 CTGCTCGACTTCCAGCCCGGAAACCAGTTGGACCA-GTCGAAGACCAACATCCCCGTCCC 218516 |||| | || || |||| || | | | ||| | | || ||| ||| || | Sbjct 316495 CTGCGCAACCTCGAGCCGGGGACCTTCGTCGACTACGCCGTCGACGC-CATGTCCTACGG 316437 Query 218517 TGACTTCATCGACAAGGAGCTCATTCTTTTC----TCGCGGTATGATGTGGAGCGTTCTA 218572 |||||| | ||||||||||||| || ||| ||||| || |||| || | Sbjct 316436 CGACTTCGTGAACAAGGAGCTCATCCTCTTCTCCGTCGCG----GACAACCAGCGGTCGA 316381 Query 218573 TTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCA 218632 | || ||| || || || || ||||| |||||||| ||| | ||||| ||| |||| Sbjct 316380 TCCCGTCCGTCGTCGACGGGCTGAAGCCGTCGCAGCGCAAGGTGCTCTTCGCCTGCTTCA 316321 Query 218633 AGCGGAACCTGGTTCAAGAA----ATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 |||| || | ||||||| || |||||||| ||| | | || || || || || Sbjct 316320 AGCGCAA----GCTCAAGAAGGAGATCAAGGTCGCCCAGCTCGCGGGCTACGTGTCGGAG 316265 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 | | |||||| ||||| ||| ||| || ||| | || || |||||||| ||| Sbjct 316264 CACGCGGCCTACCACCACGGCGAGATGAGCCTCACGGGCACGATCGTCGGCATGGCGCAG 316205 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 |||| ||||||| |||||| ||||| ||||| ||| || ||||| || | || Sbjct 316204 GACTTTGTGGGCTCGAACAACGTGAACCTGCTGACGCCCGCGGGCCAGTTCGGCACGCGC 316145 Query 218809 CTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTTACAAAGTTGTCGCCCGTG 218868 | |||| || ||||| || | | || ||||| || ||| | | |||| Sbjct 316144 ATCATGGGCGGCAAGGACGCCGCGAGCTCGCGCTACATCTTCACGAAGCTCGAGGCCGTC 316085 Query 218869 ACGCGCCAGGTGTTCAATCAGGCCGATGATGTGCTCCTTAAGTATCTTGAGGACGATGGT 218928 ||||| |||| ||| | | || ||| || | |||| | || || |||||||| || Sbjct 316084 GCGCGCAAGGTCTTCCACCCGGACGACGACTTCGTCCTCGACTACCTCGAGGACGACGGC 316025 Query 218929 TCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATTCCGTTTTTGCTCGTAAATGGTGCC 218988 || || ||||| || || ||||| | | || || |||| || || ||| Sbjct 316024 CAGTCCATCGAGCCGACGTACTACGTGCCCGTCCTGCCCTTCGCGCTCTGCAACGGCGCC 315965 Query 218989 AATGGTATCGGGACAGG 219005 | || ||||| || || Sbjct 315964 GACGGCATCGGCACGGG 315948 >seq21 Length=716958 Score = 98.7 bits (108), Expect = 2e-15 Identities = 131/182 (72%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 280179 GGACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC 280238 || ||||| || ||||| ||||| || || ||||| |||| |||||| | || || Sbjct 260672 GGCCCCAACGGCGCGGGCAAGTCGACGCTCATCAAGAATTTGACGGGCGAGGTCGAGCCC 260613 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 ||| | || ||| ||| || ||| ||| || | ||| |||| ||||||||| Sbjct 260612 TGCACGGGCACGGTCTGGGCGCACCCGAACGCGCGCATCGGCTACATCGCGCAGCACGCT 260553 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTAT 280358 || ||||||||||||| |||||| ||| ||| || ||| | ||||| | |||||||| Sbjct 260552 TTTCACCACATCGAGAGCCACCTCAACAAGACGCCCAACGAGTACATCCGCTGGCGCTAC 260493 Query 280359 GC 280360 || Sbjct 260492 GC 260491 Score = 84.2 bits (92), Expect = 4e-11 Identities = 171/251 (68%), Gaps = 6/251 (2%) Strand=Plus/Minus Query 280678 TGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAGA 280737 |||| ||||| | || || | || ||| ||||| || || || || ||||||| Sbjct 260116 TGGGGCTGGAGGCGGAATTCGCGACGCACCACCGCATCTCCGCGCTCTCCGGCGGCCAGA 260057 Query 280738 AGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGACG 280797 ||||||| | || |||| || || ||||| || || ||| | || | ||||||| Sbjct 260056 AGGTCAAGGTCGTGCTCGGCGCGGCCATGTGGATGCAGCCCCACATCGTCATCCTCGACG 259997 Query 280798 AGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTGAGTGCTGC--TCTG-GACA 280854 |||| || || ||||||||||||||| ||| ||||| || | || || | ||| Sbjct 259996 AGCCGACGAATTATCTGGACCGCGAGTCCCTCGGCGCGCTCGCCGACGCGATCCGCGAC- 259938 Query 280855 CATTTGGCGGCGGCGTCGTAGTCATTTCTCACAGCACAGAATTTGTCAAGTCTGTGTGCT 280914 || | ||||||||||| |||| || |||| || || || | | | ||||| Sbjct 259937 --TTCGAGGGCGGCGTCGTCATCATCTCGCACAACAACGACTTCACGACGGCCTTGTGCC 259880 Query 280915 CCGAGATGTGG 280925 |||||| |||| Sbjct 259879 CCGAGACGTGG 259869 >seq9 Length=1602328 Score = 91.5 bits (100), Expect = 3e-13 Identities = 149/213 (70%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||||| |||||||| | ||||||| ||| | ||| | | ||| ||| Sbjct 1502928 GATCTCCCACGTCGTCTTGTAGAGCGCCTTGAGATCGTCGGGGATGGCGAGAACGCCCTG 1502987 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGAC-----CAAGTCCCA 293289 || ||| || || ||||| ||||||||| | |||||||| |||| ||| Sbjct 1502988 GACAGAGCCCTTGTCCGCAATGATCTGGTTCCGGA---TCTCGGACGTCCACAAG--CCA 1503042 Query 293290 CGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTG 293349 | || ||||| || |||| ||||| |||||| || | |||||| || ||||| | Sbjct 1503043 AGCGCGATGAGGTCCCGGAGGAGGTACTTGTTGACGACAGCGAACTCGCCCGCGAGCACG 1503102 Query 293350 CGACGGCTGTAAATGTTCGAAGTGATGGGTTCG 293382 || || |||| |||||||| |||| ||| ||| Sbjct 1503103 CGCCGCGTGTACATGTTCGACGTGAAGGGCTCG 1503135 >seq95 Length=21576 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 794 TAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGCCCCAC 851 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 6322 TAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGCCCCAC 6265 >seq14 Length=1107847 Score = 87.8 bits (96), Expect = 4e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 142511 TAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGCCCCAC 142568 |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 522519 TAGCTCAGTCGGTAGAGCGCACGACTCTTAATCGTGTGGTCGTGGGTTCGAGCCCCAC 522576 >seq6 Length=2755913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 10/213 (5%) Strand=Plus/Plus Query 293175 GATCTCCCACGATGTCTTGTACACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTG 293234 ||||||||||| |||||||| | ||||||| ||| | ||| | | ||| ||| Sbjct 403637 GATCTCCCACGTCGTCTTGTAGAGCGCCTTGAGATCGTCGGGGATGGCGAGAACGCCCTG 403696 Query 293235 GATAGACCCTCCGTTGGCAATAATCTGGTTCTTCATTGTCTCGGAC-----CAAGTCCCA 293289 || ||| || || ||||| ||||||||| | |||||||| |||| ||| Sbjct 403697 GACAGAGCCCTTGTCCGCAATGATCTGGTTCCGGA---TCTCGGACGTCCACAAG--CCA 403751 Query 293290 CGAGCAATGAGCTCGCGGACAAGGTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTG 293349 | || ||||| || |||| ||||| |||||| || | |||||| || ||||| | Sbjct 403752 AGCGCGATGAGGTCCCGGAGGAGGTACTTGTTGACGACAGCGAACTCGCCCGCGAGCACG 403811 Query 293350 CGACGGCTGTAAATGTTCGAAGTGATGGGTTCG 293382 || || || | |||||||| |||| ||| ||| Sbjct 403812 CGCCGCGTGAACATGTTCGACGTGAAGGGCTCG 403844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821194546585