Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq5 104 2e-17 seq240 98.7 8e-16 seq34 98.7 8e-16 >seq5 Length=3000003 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||||| | || || ||| || || || || || Sbjct 733105 CGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 733164 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || || Sbjct 733165 CGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 733224 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | |||||| ||| |||||||| | || | || ||||| || || || Sbjct 733225 CACGTTGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCCGTGAGCGT 733284 Query 114365 TTTTACAAAAATCTGCATGG 114384 || || || |||||||||| Sbjct 733285 CTTGACGAAGATCTGCATGG 733304 >seq240 Length=9970 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||||| | || || ||| || || || || || Sbjct 1481 CGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 1422 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || || Sbjct 1421 CGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 1362 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | || || ||||| | || | |||||||| || || || Sbjct 1361 CACGTTGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGT 1302 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 1301 CTTGACGAAGATCTGCATG 1283 >seq34 Length=376640 Score = 98.7 bits (108), Expect = 8e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244 ||| || || || || |||||||| ||||| | || || ||| || || || || || Sbjct 72740 CGTCGACTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCC 72799 Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTT 114304 ||| |||| || ||||| ||||||||||| ||||| || ||||| ||||| || || Sbjct 72800 CGCGAAGATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 72859 Query 114305 TAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGT 114364 | | || | ||||| | || || ||||| | || | |||||||| || || || Sbjct 72860 CACGTTGTCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGT 72919 Query 114365 TTTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 72920 CTTGACGAAGATCTGCATG 72938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420128332340220