Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 129 5e-25 seq26 107 2e-18 seq21 104 2e-17 seq2 95.1 1e-14 seq240 89.7 5e-13 seq34 89.7 5e-13 seq10 89.7 5e-13 seq28 84.2 2e-11 seq16 84.2 2e-11 seq5 84.2 2e-11 >seq6 Length=2755913 Score = 129 bits (142), Expect = 5e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| |||| | ||| || || ||||| || ||||||||||| || || |||||| Sbjct 2370667 CCGCCGCGCAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCTG 2370726 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| |||| | || |||||||||||||| Sbjct 2370727 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGCCGCTGCTGGTCCGGCGGG 2370786 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || |||||||| || | || | || | ||||||| | |||||| Sbjct 2370787 ATGCCCTCCTTGTCCTGTATTTTTTGCTTCA-CGTTGTCGATGGTGTCGCTCGGCTCGAC 2370845 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGC 45345 ||||| || | ||| || || || || || || || |||||||||||| ||| Sbjct 2370846 GTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAAATTTGCATCCCGC 2370898 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| |||| | ||| || |||||||| || || |||||||| || || ||| Sbjct 2370892 ATCCCGCCGCGCAGCCGGAGCACGAGGTGCAGCGTCGACTCTTTTTGGATGTTGTAGTCG 2370951 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | ||| || || | || || || || | || | || |||||||||||| Sbjct 2370952 CTCAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCAAAAATGAGCCGCTGCTGGTCCGGC 2371011 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || ||||| |||||||| || | || | || | ||||||| | ||| Sbjct 2371012 GGGATGCCCTCCTTGTCTTGGATTTTTTGCTTCA-CGTTGTCGATGGTGTCGCTGGGCTC 2371070 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 ||| ||||| || | ||| || || || || || || || || || ||| Sbjct 2371071 GACGTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAGATCTGC 2371119 >seq26 Length=549629 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||||| | ||| || || ||||| || ||||| ||||| || || |||||| Sbjct 459802 CCGCCGCGGAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 459861 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | |||||||| ||||||||||| || Sbjct 459862 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGGGG 459921 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| | |||||| Sbjct 459922 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCGCTGGGCTCGAC 459980 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| || ||||| || || || || || || ||||| Sbjct 459981 GTCGAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCAT 460028 >seq21 Length=716958 Score = 104 bits (114), Expect = 2e-17 Identities = 277/419 (66%), Gaps = 11/419 (3%) Strand=Plus/Plus Query 122916 CAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGAAAACGCGACC 122975 || || ||| ||||||||||||| | ||| | ||||| |||| ||| |||| Sbjct 324675 CAGCACATGATCATGCGCGTCGCGCTGGGCATCCACGGCGACGACCTCGCGGGCGCGCTG 324734 Query 122976 GAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCACTTTGTTCGCC 123035 || || ||||| ||||||| || || | ||||||||||||| || || | ||| | Sbjct 324735 GAGACCTACGAGATGATGTCGCAGAAGATGTTCACGCACGCGACGCCGACGCTCTTCAAC 324794 Query 123036 GCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCACCTTGCGCGAAGACAGC 123095 ||||||||| | || ||| |||| ||||| || || | || || || ||| | Sbjct 324795 GCCGGCACGCCGCGCCCCCAGCTGTCGTCGTGCTTCCTGTTGGCCATGAAGGAGGACTCC 324854 Query 123096 ATCACCGGTATCTATGAAACTTT---GCGCGATTGCGCGTTGATTTCCAAATTTGGCGGC 123152 ||| || ||||| || || | |||| |||||| || ||||| | | ||| Sbjct 324855 ATCGAGGGCATCTACGACACGCTCAAGCGC---TGCGCGGCCATCTCCAAGTACGCGGGC 324911 Query 123153 GGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGC-CGCATCAGAAGCACCGA 123211 ||||| ||| || |||||| || | | || |||| | |||| | | | | Sbjct 324912 GGCATCGGCCTGTCGGTGCACAACATCCG-CGCGACGGATTCGTACATCCGCGGGTCGAA 324970 Query 123212 CGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGT 123271 ||| | | ||| ||| ||||||| || || ||||| || | | ||| |||| Sbjct 324971 CGGCACGTCGAACGGCATCGTGCCCATGCTCCGCGTCTACAACGACACGGCGCGCTACGT 325030 Query 123272 CGACCAG---GGCGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACCGTGGCACG 123327 |||||| |||||||| ||||| ||| | | || ||||| || || || ||||||| Sbjct 325031 GGACCAGGGCGGCGGCAAGCGCAAGGGCTCCTTCGCCATCTACCTCGAGCCCTGGCACG 325089 >seq2 Length=3465789 Score = 95.1 bits (104), Expect = 1e-14 Identities = 158/226 (70%), Gaps = 2/226 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| |||| | ||| || |||||||| || ||||| ||||| || || |||||| Sbjct 660809 CCGCCGCGCAGCCGGAGCACGAGGTGCAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 660868 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || ||||||||||| || Sbjct 660869 AGCGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 660928 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||||| | |||||| Sbjct 660929 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATGGTGTCGCTGGGCTCGAC 660987 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGC 45338 ||||| || | ||| || || || || || || || ||||| ||| Sbjct 660988 ATCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAAATCTGC 661033 >seq240 Length=9970 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || ||||| || ||||| ||||| || || |||||| Sbjct 1510 CCGCCGCGAAGACGAAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 1451 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | |||| || ||||||||||| || Sbjct 1450 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 1391 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||| || | ||| || Sbjct 1390 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTCCAC 1332 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | |||||||| || || || || || || || ||||| Sbjct 1331 GTCGAGCGTGATGGTTTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 1284 >seq34 Length=376640 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || ||||| || ||||| ||||| || || |||||| Sbjct 72711 CCGCCGCGAAGACGAAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 72770 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | |||| || ||||||||||| || Sbjct 72771 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 72830 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||| || | ||| || Sbjct 72831 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTCCAC 72889 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | |||||||| || || || || || || || ||||| Sbjct 72890 GTCGAGCGTGATGGTTTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 72937 >seq10 Length=1654512 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || ||||| || ||||| ||||| || || |||||| Sbjct 861917 CCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 861976 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || ||||||||||| || Sbjct 861977 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 862036 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||| || | |||||| Sbjct 862037 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTCGAC 862095 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| ||||| || || || || || || || ||||| Sbjct 862096 GTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 862143 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || ||||| || ||||| ||||| || || ||| Sbjct 862142 ATGCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 862201 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || || || | || || || ||| | || | || ||||||||||| Sbjct 862202 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGG 862261 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || || | || | || | ||||| || | ||| Sbjct 862262 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTC 862320 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| ||||| || || || || || || || ||||| Sbjct 862321 GACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 862371 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || |||||||| | | || || || ||||| || ||||| ||||| || || ||| Sbjct 862370 ATGCCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCG 862429 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 |||| || || || | || || || ||| | || | || ||||||||||| Sbjct 862430 CTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGG 862489 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || || | || | || | ||||| || | ||| Sbjct 862490 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTC 862548 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | ||| ||||| || || || || || || || ||||| Sbjct 862549 GACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACGAAGATCTGCAT 862599 >seq28 Length=462849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || ||||| || ||||| ||||| || || |||||| Sbjct 34772 CCGCCGCGGAGGCGGAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 34713 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || || || | || || || ||| | || | || ||||||||||| || Sbjct 34712 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 34653 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||| || | |||||| Sbjct 34652 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCCGAGGGCTCGAC 34594 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | ||| || || || || || || || || || ||||| Sbjct 34593 GTCGAGCGTGATCGTCTTCCCCGTGAGGGTCTTGACGAAGATCTGCAT 34546 >seq16 Length=966663 Score = 84.2 bits (92), Expect = 2e-11 Identities = 107/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 45195 TGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATT 45254 || || || ||| | || | || ||||||||||| || ||||| || || || || || Sbjct 441982 TGCTTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATC 441923 Query 45255 TTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCC 45313 || || |||| || | || | |||||||| | |||||| ||||| || | ||| ||||| Sbjct 441922 TTCTGCTTGA-CGTTGTCGATCGTGTCGGACGGCTCGACGTCGAGCGTGATCGTCTTGCC 441864 Query 45314 GGTTAGAGTTTTTACAAAAATTTGC 45338 ||| || ||||| || || || ||| Sbjct 441863 GGTGAGGGTTTTCACGAAGATCTGC 441839 >seq5 Length=3000003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || ||||| || ||||| ||||| || || |||||| Sbjct 733076 CCGCCGCGAAGACGAAGGACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGCTG 733135 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || ||| || | || || || ||| | |||| || ||||||||||| || Sbjct 733136 AGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAGATCAGGCGCTGCTGGTCCGGAGGG 733195 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| | |||||| Sbjct 733196 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTGTCGATCGTGTCGCTGGGCTCGAC 733254 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || | || ||||| || || || || || || || ||||| Sbjct 733255 GTCGAGCGTGATGGTCTTGCCCGTGAGCGTCTTGACGAAGATCTGCAT 733302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451996504702600