Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq2 370 1e-97 >seq2 Length=3465789 Score = 370 bits (410), Expect = 1e-97 Identities = 768/1132 (68%), Gaps = 22/1132 (2%) Strand=Plus/Plus Query 7021 GATGGCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATT 7080 ||||||||| |||||||| || ||||| ||||| ||||| |||||||| || | || Sbjct 2974886 GATGGCGGCCTGGACCGTGGCGCCGTAGGCGACGGCCTCGTCGGGGTTGATGGACTTGCA 2974945 Query 7081 CAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGA 7140 | || || ||||| || | || || | | || || |||||||| || ||||| Sbjct 2974946 GGGCTCCTTGCCGTTGAAGAAGTCGGAGAGGAGGCTCTGGATCTTCGGGATGCGCGTCGA 2975005 Query 7141 TCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGT 7200 || ||||| | |||| || || || | || || ||| | ||| || | Sbjct 2975006 GCCGCCGACGAGGACGACCTCGTTGACCTGGCTCTTGGAGAGCTTGGCGTCGCGCATGAC 2975065 Query 7201 TTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGC 7260 || ||||| || ||||| || || ||||| ||||||| || ||||| || || || Sbjct 2975066 CTTCTCGACGGGGTCCATGCACTTGCGGAAGTAGTCCATGTTGAGGTCCTCGAAGCGCGC 2975125 Query 7261 ACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGT 7320 ||||| || | | | ||| || | ||| ||| | | ||| || || || | | | Sbjct 2975126 GCGGGTGATCGTCGAGTTGAAGTCGATGCCCTCGAAGAGCGAGTCGATCTCGAGGTGGGC 2975185 Query 7321 TTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAG 7380 || | || || || | ||| ||||| |||||||| || ||||| || | || || || Sbjct 2975186 CTGGGTCGAGGAGGAGAGCGTGCGCTTGGCGCGCTCGCAGGCCGTGCGGAGGCGGCGGAG 2975245 Query 7381 GGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCT-TCAGAGAAGT 7439 ||| ||| |||| | || ||||| || || || ||||| | || ||||| Sbjct 2975246 GGCGCGCTGGTTCGTCTTCAGGTCCTTCTTGAACTTGCGCTTGAACTCGGTGAG-GAAGT 2975304 Query 7440 -GTCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCG 7496 ||||| | | | | ||||| || || || || | ||| || || || || |||| Sbjct 2975305 AGTCGACCATGCGGTTG---TCGAAGTCCTCGCCGCCGAGGTGCGTGTCGCCGGCCGTCG 2975361 Query 7497 CTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCAC 7556 | ||||| || ||||| || | || ||| | | | || || || || || || || | Sbjct 2975362 CCTTGACCTCGAAGATGCCCTCCTCGATGGTGAGGAGGGACACGTCGAAGGTGCCGCCGC 2975421 Query 7557 CCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGA 7616 | ||||| || ||||| ||||| |||||| | || ||| ||||| ||||| |||| Sbjct 2975422 CGAGGTCGAAGATGAGCACGTTGCGCTCGTCGCCCTT---CTTGTCGAGGCCGTAGGCGA 2975478 Query 7617 TAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCG 7676 | ||||| ||||| || || || || || || || ||| ||||| || || | ||| Sbjct 2975479 TGGCCGCGGCCGTGGGCTCGTTGATGATGCGGAGGACGTTGAGGCCCGCGATGGAGCCCG 2975538 Query 7677 CATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGT 7736 | || || ||||| || || || || ||||| ||||||||||| || || |||||||||| Sbjct 2975539 CGTCCTTGGTCGCCTGGCGCTGGGAGTCGTTGAAGTAGGCCGGCACGGTGACGACCGCGT 2975598 Query 7737 CCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCG 7796 | |||| | ||| ||||| |||| |||||||| || ||||| ||| | || ||||| | Sbjct 2975599 TCTTGACCTCCTTGCCGAGGTACGCGTCCGCGATCTCCTTCATCTTGATGAGGACCATGG 2975658 Query 7797 ATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTT---AAAATCAACTTCAATCA 7853 | || ||||| || || || || || | || |||| | || | ||| Sbjct 2975659 ACGAGATCTCCTCGGCGGCGAA---GGTCTTCTCCTCGTTGCGGTAGGTGACGTGGATC- 2975714 Query 7854 TGGGTTTATCCGCAG-CACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGG 7912 |||| | |||| | | ||| | ||||| | | ||| | ||||| ||| ||| Sbjct 2975715 TGGGGCTTGCCGCCGACGCCGCCCGTGACCTTGAAGGGCCAGTGCTTCATGTCGGACTGG 2975774 Query 7913 ACCTGTTGGTCCGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTG 7972 ||| ||||| ||||| | ||||| || ||||| || || || || ||||| | Sbjct 2975775 ACCGCCGCGTCCGTGAACTTGCGGCCGATGAGGCGCTTCGCGTCGAAGACCGTGTTGAAG 2975834 Query 7973 GGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTA 8032 | ||||||||| |||||||| || ||||| ||||| || || || | || | Sbjct 2975835 GCGTTCATGGCGACCTGGTTCTTGGCGGCGTCGCCGATGAGGCGCTC---CGTCTCGTTG 2975891 Query 8033 AACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGG 8092 || || ||||| || || ||||| || || || |||||||| || || || || |||||| Sbjct 2975892 AAGGCCACGTAGGACGGCGTCGTGCGGTTGCCCTGGTCGTTGGCGATGATCTCGACGCGG 2975951 Query 8093 TCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCAATACCGA 8144 ||||| |||||||||||||||||||| || || || || | || || |||| Sbjct 2975952 TCGTTCTGCCAGACGCCGACGCACGAGTAGGTCGTGCCGAGGTCGATGCCGA 2976003 Score = 86.0 bits (94), Expect = 8e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAA-GACAGT 7655 ||| ||||| ||||| ||||| ||||| ||||| || || || || | || ||| | Sbjct 1490378 CTTGTCGAGGCCGTAGGCGATGGCCGCGGCCGTCGGCTCGTTGATGACGCGCTCGACC-T 1490320 Query 7656 TCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGG 7715 | ||||| || || || |||| || || ||||| || || || | ||||| ||||||| Sbjct 1490319 TGAGGCCCGCGATCGTGCCCGCGTCCTTGGTCGCCTGGCGCTGGGCGTCGTTGAAGTAGG 1490260 Query 7716 CCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTT 7775 |||| ||||| || || |||| | |||| | | | || || | | || || | || | Sbjct 1490259 CCGGCACCGTCACCACAGCGTGCTTGACCTCCGTGCCCAGGAAGGCCTCGGCCGTGTCCT 1490200 Query 7776 TCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 |||| ||| || | ||||| || | ||| || Sbjct 1490199 TCATCTTGCCGAGGATCATCGCGGACACCTCCTC 1490166 Score = 82.4 bits (90), Expect = 1e-10 Identities = 133/189 (70%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 7928 AACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTT 7987 ||||| | ||||| || ||||| || || | || ||||| || |||||| | | Sbjct 1490044 AACTTGCGGCCGATGAGCCGCTTCGCGTCGTAGACCGTGTTCTTCGGGTTCTGCGACGCC 1489985 Query 7988 TGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCG-ACGTACGA 8046 ||||||||||||||||| |||| || || | | ||| | | || ||||| || Sbjct 1489984 TGGTTCTTCGCCGCGTCGCCGACGAGGCGG-CTCCCGTCGCCGCAGAAGCTCACGTAGGA 1489926 Query 8047 TGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGAC 8106 || || | || ||||| |||||||| || || || ||||| |||| |||||||| Sbjct 1489925 CGGCGTGATGCGGTTCCCCTGGTCGTTGGCGCAGATCTCCACGCGCCCGTTCTGCCAGAC 1489866 Query 8107 GCCGACGCA 8115 ||||||||| Sbjct 1489865 GCCGACGCA 1489857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635123392095400