Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq16 118 1e-21 seq21 111 2e-19 seq3 105 8e-18 seq19 102 1e-16 seq39 84.2 3e-11 >seq16 Length=966663 Score = 118 bits (130), Expect = 1e-21 Identities = 599/942 (64%), Gaps = 17/942 (2%) Strand=Plus/Minus Query 110290 ATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTA 110349 || ||||| || ||||| || | ||||||| | ||||| || | || ||||| Sbjct 709442 ATGGACGCCAGGTTGCAGACCGCGATCTCGTCGGGCGCCGTGTACTCGACGATCTCCGTG 709383 Query 110350 CACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCA 110409 |||| ||| || ||| || ||||| | |||||| ||||| ||| |||||| || Sbjct 709382 CACAGGTTCGACGACTTGATCGTCCCCAAATGCTTCTGGTTCGACTTGCCGTTGCAGGCG 709323 Query 110410 TCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCAT 110469 ||||| ||||||||||| || || || || || ||| | ||| ||||| ||| Sbjct 709322 TCCTTGTAGAGCATGTAGGGCGTGCCCGTCTCGACCTGGCTGTCGAGGATGGCGAACCAG 709263 Query 110470 ACAT-CGGCGGCGGGGACAG--TTGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTAC 110526 | | | ||| |||||| | ||||| || || ||| | |||| || ||| Sbjct 709262 AGCTGCTGCG-CGGGGATGGCCTTGCGCGCGC-AGCCCT-CGGCCTCATAGCGCTCGTAG 709206 Query 110527 AAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAG 110586 | |||| || | |||| || | || ||| || || ||| || | | Sbjct 709205 AGCGCCTCGAACTTGGCGCCGTGGCAGTCCGCGAGGCCCGGGCACTCGTTGGGGCACATG 709146 Query 110587 AGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCC 110646 |||||||| || |||| || | ||||||||||||||| || ||||| | | Sbjct 709145 AGGGACCAGAAGCCGTTGGCCTCGACGCGCTTCATGAACAGGTCCGGGATCCAGAGGCCA 709086 Query 110647 GAGAAAAGGTCACGGCAACGAGCCTCT---TCATCACCTTGGTTGAGGCGTAGCTCCAAA 110703 |||||||||| || ||| |||| || | || ||||| || || | Sbjct 709085 TAGAAAAGGTCGCGCGCACG---CTCTAGCTCGTTGCCATGGTTCTTCTTCAGGTCGAGC 709029 Query 110704 AAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACGACGA 110763 | | ||| |||| |||||| || ||||| |||| |||| ||| ||||| || | Sbjct 709028 CACATCTCGATGTCCGCGTGCCAGGGCTCGAGGTAGATGGCGAAGGAGCCCTTGCGCCTG 708969 Query 110764 C--CCGCC-TGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATT 110820 | ||||| |||| || || || || || | ||| |||| | |||||| || | || Sbjct 708968 CGGCCGCCCTGGTCCACGTAACGCGCAGTATCGTTGTAGACGCGGAGCATGGGCACGATG 708909 Query 110821 CCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATA 110880 || | || ||||| | || | || ||| | | || || || | ||||| Sbjct 708908 CCGTTCGACGTGCCATTCGACCCGCAGATGTAGGAGTCCGTCGCGCGGATATTGTGGACC 708849 Query 110881 TGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATA 110939 || || || || ||||| |||| || || || | || |||| || | || Sbjct 708848 GACAGGCCGATGCCGCCCGCGTACTTGGAGATGGCCGCGCAGCGCT-TGAGCGTGTCGTA 708790 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACG 110999 || || || || || || |||| |||| | ||| ||||| ||||| ||| || || Sbjct 708789 GATGCCCTCGATGGAGTCCTCCTTCATGGCGAGTAGGAAGCAGCTAGACAACTGCGGCCG 708730 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTT 111059 ||||| || ||||||||||| || || ||||| || |||||| || |||||| | Sbjct 708729 CGGCGTGCCGGCATTGAAGAGCGTCGGCGTCGCGTGCGTGAACATCTTCTGCGACATCAT 708670 Query 111060 GTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCAT 111119 | ||| || |||| ||| | | || | ||||| || || | || || ||||| Sbjct 708669 CTCGTAGGTCTCGAACGCGCCCGCCAGGTCATCGCCGTGGATGCCGAGCGCGACGCGCAT 708610 Query 111120 GAACATATATTGAGGCGTTTCGATTAGCTTTCCATCAACACGCTGAAGGTAACTCTTCTC 111179 || ||| | |||||| || | | || || | ||| ||||| ||| ||| Sbjct 708609 GATCATGTGCTGAGGCCGCTCCGCGATCGCGCCGTCCAGGCGCATGAGGTAGCTCCGCTC 708550 Query 111180 TAGGGTCTTGAGACCAAAGTATCCAAAATCGAAATCACGATC 111221 || ||||||| || ||||| | | ||||| || || || Sbjct 708549 GAGCGTCTTGAAGCCGAAGTAGTCGTACTCGAAGTCGCGGTC 708508 >seq21 Length=716958 Score = 111 bits (122), Expect = 2e-19 Identities = 289/438 (66%), Gaps = 6/438 (1%) Strand=Plus/Minus Query 109404 CGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGA 109463 || ||| || || ||||| ||||| ||||| || |||||| ||||| | ||||| || Sbjct 326405 CGTGCGGAGGTAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGGCGTAGAAGTGCATGGA 326346 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGAT 109523 | ||| ||| | |||| | | || | ||||| ||||| ||||| ||| Sbjct 326345 CGTGAGCTTGCCCGGGTTCGGGTCCGCGATGTGGAGGTTCAGGGACTGGGACTGGCAGAT 326286 Query 109524 GAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGT 109583 ||| || || || || | |||||||| || ||||| || | || ||||| || Sbjct 326285 GAACGCGCCGCGGTCCGCGGACATGTCGAGGACGCACTTCTGCTTGATCTCCCACGTCGT 326226 Query 109584 CTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGC 109643 |||||| | ||||| || ||||| ||| || ||| | || | ||||| | | Sbjct 326225 CTTGTAGAGCGCCTTGAGGTCGTCGGGGATGGCCGCGACGCCCTGGACGGAGCC-CTTGT 326167 Query 109644 CTTCACCATGAGATCCTTC---ATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGTC 109700 | | |||| | ||| ||||| || ||| || || | |||| || | Sbjct 326166 CGGCG--ATGATCTGGTTCCGGATCTCCGACGTCCACAGGCCCCGCGCGATGAGGTCCTG 326109 Query 109701 AACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTT 109760 | || | ||||||||| ||| | || || || || || ||| || ||| ||||| Sbjct 326108 GAGGAGGTACTTGTTGACGACGGCGAACTCGCCCGCGAGCACGCGCCGCGTGTACATGTT 326049 Query 109761 AGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGG 109820 | |||| |||| ||||| |||| |||||||| ||||| || || || || || ||||| Sbjct 326048 CGACGTGAAGGGCTCGAAGGACTCGTTGTTGCCGAGGATCTGCGCCGTCGACGCCGTGGG 325989 Query 109821 CATGGGAGCCATGAGAAG 109838 |||||| || | ||| || Sbjct 325988 CATGGGCGCGAGGAGGAG 325971 >seq3 Length=3001400 Score = 105 bits (116), Expect = 8e-18 Identities = 313/478 (65%), Gaps = 5/478 (1%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || ||||| || || |||||||| || || || || || ||| | ||||| || || Sbjct 2009140 CGGTCGAAGCGGCCGGGGCGGAGGAGCGCCGAGTCGAGGATGTCGCCGCGGTTCGTCGCC 2009199 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || | ||| | | ||| | | | ||| |||||||| || ||||| | |||||| Sbjct 2009200 GCGAGGACGATGACGCCGCTGTTGCCGCTGAAGCCGTCCATCTCCGTGAGGATCTGGTTC 2009259 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCT--GCCGAAC-GCTTCTTACCG 11679 | |||||| || ||||| ||||| | | | || || |||| || ||| ||| Sbjct 2009260 AGCGTCTGCTCGCGCTCGTCGTTCGTCGCGAAGCCGCCGCCGCCGGACCGCTGGCGGCCG 2009319 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 | ||||| ||||| |||||||| | ||| || || ||| || | |||| Sbjct 2009320 ATGGCGTCGATCTCGTCGATGAAGATGATGCAGGGCGCGTTCTTCTTCGCGTCGCCGAAG 2009379 Query 11740 AGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAA 11799 || | || | ||| ||| || || || ||||||||||| ||||| | | | | || Sbjct 2009380 AGGTTGCGGATGCGCGACGCGCCGACGCCGACGAACATCTCGACGAACTCGGAGCCGGAC 2009439 Query 11800 CACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCC 11859 | ||||| || || | ||| || ||| ||| || |||||||| ||||| ||| Sbjct 2009440 GTCGAGATGAACGGCACGCCGGCCTCGCCCGCGCAGGCGCGCGCGAGGAGCGTCTTGCCC 2009499 Query 11860 GTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACC-ACTTCCAAAGTA 11918 || || || | || |||| || |||| ||||| |||| || || || | | | Sbjct 2009500 GTGCCGGGCGGGCCCTCGAGGAGCACGCCGCGGGGCGTCTTCGCGCCGACCT-TGGTGAA 2009558 Query 11919 GCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 ||| || | |||||||||||| || | ||| | || || ||||| |||||| Sbjct 2009559 CTTCTCCGGGTACTTGAGGAAGTCGACGACCTCGACGAGCTCGAGCTTGGACGAGTCG 2009616 >seq19 Length=762245 Score = 102 bits (112), Expect = 1e-16 Identities = 250/372 (67%), Gaps = 13/372 (3%) Strand=Plus/Plus Query 11589 GTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGA 11648 || ||| |||||||| || ||| |||||||| | ||| | || ||||| |||||| Sbjct 237106 GTTGAAGCCGTCCATCTCCACGAGGAGCTGGTTCAGCGTGTTCTCGCGCTCGTCGTTGCC 237165 Query 11649 GGGC---ATACCACCT--GCCGAACGCTTCTTACCGACAGCGTCAATCTCATCGATGAAT 11703 | | | || || |||| |||| ||||| ||||| ||||| ||||| || Sbjct 237166 GCCCGCGAAGCCGCCGCGGCCG--CGCTGGCGGCCGACGGCGTCGATCTCGTCGATAAAA 237223 Query 11704 ACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCA 11763 | ||| || || ||||| || || |||| | ||| || || || || ||| || || Sbjct 237224 ATGATGCAGGGCTGGTTCGCCCGCGCCTCCTTGAAGAGGTCGCGCACGCGCGACGGCCCG 237283 Query 11764 ACACCTACGAACATCTCAACGAAGTTTGCGGCAGA-ACACTGAATGAAGGGAACATTAGA 11822 || || ||||||||||| || || | | | | || | ||| | ||| || || || | Sbjct 237284 ACGCCGACGAACATCTCCACAAACTCCGAGCCCGAGATGCTGTA-GAACGGCACGTTCGC 237342 Query 11823 CTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAG 11882 ||| || || | || || | || ||||| ||||| || || | || ||| || Sbjct 237343 CTCGCCCGCCGTCGCCTTCGCCAAAAGCGTCTTGCCCGTGCCCGGCGGGCCGCAGAGGAG 237402 Query 11883 GGCGCCACGGGGGATCTTGGCACC--ACTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAG 11940 ||| || |||||||||||| || |||| | ||||||| || | ||||||||| Sbjct 237403 GGCCCCCTTGGGGATCTTGGCGCCGAGCTTC--GTGAAGCGCTCCGGGTCCTTGAGGAAC 237460 Query 11941 TCCACAATCTCC 11952 || || | |||| Sbjct 237461 TCGACGAACTCC 237472 >seq39 Length=313712 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 109710 CTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTA 109769 ||||||||| ||| | || || || || || ||| || ||| ||||| | |||| | Sbjct 144682 CTTGTTGACGACGGCGAACTCGCCCGCGAGCACGCGCCGCGTGTACATGTTCGACGTGAA 144623 Query 109770 GGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGC 109829 ||| ||||| |||| |||||||| ||||| || || || || || ||||||||||| || Sbjct 144622 GGGCTCGAAGGACTCGTTGTTGCCGAGGATCTGCGCCGTCGACGCCGTGGGCATGGGCGC 144563 Query 109830 CATGAGAAG 109838 | ||| || Sbjct 144562 GAGGAGGAG 144554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588967275793000