Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq240 102 5e-17 seq34 102 5e-17 seq5 102 5e-17 seq26 93.3 3e-14 seq10 91.5 1e-13 seq6 89.7 3e-13 seq28 87.8 1e-12 seq4 84.2 1e-11 seq2 84.2 1e-11 >seq240 Length=9970 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| || ||||| || || || || Sbjct 1474 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAG 1415 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 1414 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 1355 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || |||||||| |||||||| ||||| || Sbjct 1354 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGTCTTGACG 1295 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 1294 AAGATCTGCAT 1284 >seq34 Length=376640 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| || ||||| || || || || Sbjct 72747 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAG 72806 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 72807 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 72866 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || |||||||| |||||||| ||||| || Sbjct 72867 TCGATCGTGTCCGAGGGCTCCACGTCGAGCGTGATGGTTTTGCCCGTGAGCGTCTTGACG 72926 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 72927 AAGATCTGCAT 72937 >seq5 Length=3000003 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || |||| || ||||| || || || || Sbjct 733112 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAAG 733171 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 733172 ATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 733231 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || ||||| || |||||||| ||||| || Sbjct 733232 TCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCCGTGAGCGTCTTGACG 733291 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 733292 AAGATCTGCAT 733302 >seq26 Length=549629 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 459838 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 459897 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 459898 ATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 459957 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | || ||| || |||| || || || || || ||||| ||||| || Sbjct 459958 TCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACG 460017 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 460018 AAGATCTGCAT 460028 >seq10 Length=1654512 Score = 91.5 bits (100), Expect = 1e-13 Identities = 122/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 34785 GTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCG 34844 ||||| |||||||| ||||| ||||| || ||| | || | || || ||||| || || Sbjct 452682 GTGCTCTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 452623 Query 34845 GCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTG 34904 ||||| || || ||||||||||| | || | ||||||||||| |||||||| || Sbjct 452622 GCAAAAATGAGGCGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 452563 Query 34905 ACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCC 34954 ||| | || | || | || ||| || |||| || ||||| || || Sbjct 452562 ACGTTGTCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCC 452513 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 861953 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 862012 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 862013 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 862072 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || |||||||| ||||| || Sbjct 862073 TCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACG 862132 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 862133 AAGATCTGCAT 862143 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 862181 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 862240 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 862241 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 862300 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || |||||||| ||||| || Sbjct 862301 TCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACG 862360 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 862361 AAGATCTGCAT 862371 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 862409 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 862468 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 862469 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 862528 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || |||||||| ||||| || Sbjct 862529 TCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTGAGGGTCTTGACG 862588 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 862589 AAGATCTGCAT 862599 >seq6 Length=2755913 Score = 89.7 bits (98), Expect = 3e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 ||||| || ||||| ||||| ||| | || | || || ||||| || |||||||| Sbjct 2370931 TCTTTTTGGATGTTGTAGTCGCTCAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCAAAA 2370990 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| |||| | ||||||||||| || || || || ||| Sbjct 2370991 ATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATTTTTTGCTTCACGTTG 2371050 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| || |||| || || || || ||||| || ||||| || Sbjct 2371051 TCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACG 2371110 Query 34971 AAGATCTGC 34979 ||||||||| Sbjct 2371111 AAGATCTGC 2371119 >seq28 Length=462849 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || || || || Sbjct 34736 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAAG 34677 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 34676 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 34617 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || || ||| || |||| || || || || |||||||| ||||| || Sbjct 34616 TCGATCGTGTCCGAGGGCTCGACGTCGAGCGTGATCGTCTTCCCCGTGAGGGTCTTGACG 34557 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 34556 AAGATCTGCAT 34546 >seq4 Length=3024044 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||| | || | || || ||||| || || || || Sbjct 2039922 TCCTTCTGGATGTTGTAGTCGCTGAGGGTCCGGCCGTCCTCGAGCTGCTTCCCCGCGAAG 2039981 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | ||| |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 2039982 ATCAATCGCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 2040041 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | |||| || | | ||| || |||| || || || || ||||| || || ||||| Sbjct 2040042 TCGATCGTGTCGCTCGGCTCGACGTCGAGCGTGATCGTCTTGCCCGTCAGGGTTTTCACG 2040101 Query 34971 AAGATCTGC 34979 ||||||||| Sbjct 2040102 AAGATCTGC 2040110 >seq2 Length=3465789 Score = 84.2 bits (92), Expect = 1e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || | || | || || ||||| || ||||| || Sbjct 660845 TCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAAG 660904 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||||| |||||||| || ||| Sbjct 660905 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTG 660964 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | || ||| ||||||| || || || || ||||| || ||||| || Sbjct 660965 TCGATGGTGTCGCTGGGCTCGACATCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACG 661024 Query 34971 AAGATCTGC 34979 || |||||| Sbjct 661025 AAAATCTGC 661033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324628911580680