Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10 89.7 4e-13 seq6 89.7 4e-13 seq2 84.2 2e-11 >seq10 Length=1654512 Score = 89.7 bits (98), Expect = 4e-13 Identities = 111/152 (73%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||||| | ||| | || |||||||||||||| || || ||||| || || Sbjct 452712 CCGCCGCGCAGCCGGAGCACGAGGTGCAGCGTGCTCTCTTTCTGGATGTTGTAGTCGGAG 452653 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| || ||||| || || || || || |||| ||| Sbjct 452652 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGGCGTTGCTGGTCCGGGGGG 452593 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691 | |||||||||||| ||||| || || || Sbjct 452592 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC 452561 >seq6 Length=2755913 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| | ||||| | ||| | || ||||| ||| ||||| || ||||| || Sbjct 2370666 GCCGCCGCGCAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCT 2370725 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || |||| || | |||||| ||||| ||||| || ||||| || |||| || Sbjct 2370726 GAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGCCGCTGCTGGTCCGGCGG 2370785 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| || ||||| || || | | | || || ||| || Sbjct 2370786 GATGCCCTCCTTGTCCTGTATTTTTTGCTTCACGTTGTCGATGGTGTCGCTCGGCTCGAC 2370845 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||| ||||| || ||||||| || || || ||||| |||||| Sbjct 2370846 GTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAAATTTGCATC 2370894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 153/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | ||||| | ||| | || ||||| ||||||||| || ||||| || Sbjct 2370895 CCGCCGCGCAGCCGGAGCACGAGGTGCAGCGTCGACTCTTTTTGGATGTTGTAGTCGCTC 2370954 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | || |||| || | |||||| |||||||| || || ||||| || |||| || Sbjct 2370955 AGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCAAAAATGAGCCGCTGCTGGTCCGGCGGG 2371014 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | |||||||||||| || ||||| || || | | | || | ||| || Sbjct 2371015 ATGCCCTCCTTGTCTTGGATTTTTTGCTTCACGTTGTCGATGGTGTCGCTGGGCTCGACG 2371074 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGC 48764 || | ||| ||||| || ||||||| || || || || |||||| Sbjct 2371075 TCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAGATCTGC 2371119 >seq2 Length=3465789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 48533 GTCGTCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTA 48592 |||| ||||||| | || || | ||| | || ||||||||||| || || || ||||| Sbjct 3141451 GTCGGCGCCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTA 3141392 Query 48593 ATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATC 48652 || || | || |||| || | |||||| || || || |||| |||||| || || Sbjct 3141391 GTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAGATCAATCGCTGCTGGTC 3141332 Query 48653 CGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTAC 48691 || ||| | |||||||||||| ||||| || || || Sbjct 3141331 CGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCAC 3141293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380932098427755