Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq4 136 5e-27 seq6 131 2e-25 seq10 113 6e-20 seq16 111 2e-19 >seq2 Length=3465789 Score = 230 bits (254), Expect = 3e-55 Identities = 1008/1585 (64%), Gaps = 24/1585 (2%) Strand=Plus/Minus Query 195305 GGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGTGTAGAG 195364 || ||||| | || || || ||||| || || || || ||||| || || || || ||| Sbjct 2976001 GGCATCGACCTCGGCACGACCTACTCGTGCGTCGGCGTCTGGCAGAACGACCGCGTCGAG 2975942 Query 195365 ATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACAGATAAT 195424 || ||| | || ||||| || ||||| || || || || ||||| ||||| | || | Sbjct 2975941 ATCATCGCCAACGACCAGGGCAACCGCACGACGCCGTCCTACGTGGCCTTCAACGAGACG 2975882 Query 195425 GAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAATACTGTC 195484 || || ||| | || || ||||| || || ||| || |||||| | |||| || ||| Sbjct 2975881 GAGCGCCTCATCGGCGACGCCGCCAAGAACCAGGTCGCCATGAACGCCTTCAACACGGTC 2975822 Query 195485 TTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGACGATATA 195544 || ||||||||||| || || || |||||||| |||| | ||||| ||| || Sbjct 2975821 TTCGACGCGAAGCGCCTCATCGGCCGCAAGTTCACGGACGCGGCGGTCCAGTCCGACATG 2975762 Query 195545 AAGGACTGGTCTTATGAAGTTGTTCC---CGGTGTGGCTGATAAGCCTATGATTAATGTT 195601 ||| ||||| | | | ||| || | ||| || | | ||||| ||| | || Sbjct 2975761 AAGCACTGGCCCT-TCAAG--GTCACGGGCGGCGTCGGCGGCAAGCCCCAGATCCACGTC 2975705 Query 195602 GAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATT 195661 | | | ||| |||| || || |||| || || ||||| ||||| | || Sbjct 2975704 ACCTACCGCAACGAGGAGAAGACCTTCGCCGCCGAGGAGATCTCGTCCATGGTCCTCATC 2975645 Query 195662 AAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACT 195721 ||||||||||||| ||||| | | | | || || || || | || || || || Sbjct 2975644 AAGATGAAGGAGATCGCGGACGCGTACCTCGGCAAGGAGGTCAAGAACGCGGTCGTCACC 2975585 Query 195722 GTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCG 195781 || || || ||||||| || || || || |||||||| |||||||| | | || ||| Sbjct 2975584 GTGCCGGCCTACTTCAACGACTCCCAGCGCCAGGCGACCAAGGACGCGGGCTCCATCGCG 2975525 Query 195782 GGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTG 195841 || || ||| || | || ||||| || || || || || || || || || || || Sbjct 2975524 GGCCTCAACGTCCTCCGCATCATCAACGAGCCCACGGCCGCGGCCATCGCCTACGGCCTC 2975465 Query 195842 GACAAGAACAAGGACGAAGATAAAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTT 195901 |||||| |||| ||| || || || | ||||| || ||||| || || || || Sbjct 2975464 GACAAG---AAGGGCGACGAGCGCAACGTGCTCATCTTCGACCTCGGCGGCGGCACCTTC 2975408 Query 195902 GATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGAT 195961 || || || || |||| || || | || || ||||| || ||||| || || || || Sbjct 2975407 GACGTGTCCCTCCTCACCATCGAGGAGGGCATCTTCGAGGTCAAGGCGACGGCCGGCGAC 2975348 Query 195962 ACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGA-TGAGTT 196020 || || || || || || || ||||| || | | || | | || | ||||| Sbjct 2975347 ACGCACCTCGGCGGCGAGGACTTCGA-CAACCGCATGGTCGACTACTTCCTCACCGAGTT 2975289 Query 196021 CCGTCGAAAGAATAAGAAAGATATTTCTGGA----AATCCTAGGGCTCTTCGTCGGCTTA 196076 | || ||| ||||| || ||| | || | | || || || || || Sbjct 2975288 CAAGCGCAAGTTCAAGAAGGA----CCTGAAGACGAACCAGCGCGCCCTCCGCCGCCTCC 2975233 Query 196077 GGACTGCATGTGAACGTGCCAAACGAACTCTCTCTTCTACGGCTCAAACAATGGTTGAGA 196136 | || || || || || ||||| || || ||||| || || | || | | |||| Sbjct 2975232 GCACGGCCTGCGAGCGCGCCAAGCGCACGCTCTCCTCCTCGACCCAGGCCCACCTCGAGA 2975173 Query 196137 TTGATTCGTTGTTTGACGGAATTGACTTCTATACAACTATTACCCGTGCACGTTTTGAAG 196196 | || ||| | || || || || |||||| | | || || ||||| || || || || | Sbjct 2975172 TCGACTCGCTCTTCGAGGGCATCGACTTCAACTCGACGATCACCCGCGCGCGCTTCGAGG 2975113 Query 196197 AGTTAAACTCTGATTTGTTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACG 196256 | | ||| || | || | ||||| ||||| || || || | || | || |||| Sbjct 2975112 ACCTCAACATGGACTACTTCCGCAAGTGCATGGACCCCGTCGAGAAGGTCATGCGCGACG 2975053 Query 196257 CAAAGATGGATAAGTCTAAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTC 196316 | ||| | ||| |||| | || | ||||| || || || || || || || | Sbjct 2975052 CCAAGCTCTCCAAGAGCCAGGTCAACGAGGTCGTCCTCGTCGGCGGCTCGACGCGCATCC 2974993 Query 196317 CGAAGATTCAACAGATGCTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCA 196376 ||||||| || | || || ||||||||| || || ||| | |||| Sbjct 2974992 CGAAGATCCAGAGCCTCCTCTCCGACTTCTTCAACGGCAAGGAGCCCTGCAAGTCCATCA 2974933 Query 196377 ACCCGGATGAAGCAGTTGCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTG 196436 |||| || || || || || || || || | || ||||| || || ||||| || | | Sbjct 2974932 ACCCCGACGAGGCCGTCGCCTACGGCGCCACGGTCCAGGCCGCCATCCTCTCCGGCGCCG 2974873 Query 196437 AC---AATAATAACGTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTC 196493 || | || || || || || || || || || | || | || || || | Sbjct 2974872 ACTCGTCGGAGAAGCTCAGCGACCTCCTCCTCCTCGACGTCACGCCGCTGTCGCTCGGCC 2974813 Query 196494 TTGAAACAGCGGGTGGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTA 196553 | || || || || || || ||||| | || | | ||||| || | || | | Sbjct 2974812 TCGAGACGGCCGGCGGCGTCATGACCGCGCTCATCAAGCGCAACACGACGGTGCCCGCGA 2974753 Query 196554 AGAAGGAACAAGTCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTAT 196613 ||||| || ||| || || || |||| || || || || || | || || || | Sbjct 2974752 AGAAGTCGCAGACCTTCTCGACCTACGCCGACAACCAGCCCGGCGTGCTCATCCAGGTCT 2974693 Query 196614 ATGAAGGAGAACGCTCCCGTGCAAAGGATAACCATCTACTTGGAACTTTCGA-TTTGACG 196672 || || || |||||| | ||||| ||| | || || || | ||| | | ||| Sbjct 2974692 TCGAGGGCGAGCGCTCCATGACCAAGGACAACAACCTCCTCGGCAAGTTCAACCTCGAC- 2974634 Query 196673 GGGATTCCAGCTGCACCCAGAGGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCA 196732 || || || | ||| | || || ||||| | || |||||| || ||||| Sbjct 2974633 GGCATCCCGCCCATGCCCCGCGGCCAGCCCCAGATCGAGGTCACCTTCGACATCGACGCC 2974574 Query 196733 AATGGAATTCTAAACGTCACAGCTGAGGACAAGGCTTCTGGCAAATCTGAAAAGATTGTG 196792 || || || || |||||| | || | || ||| | | ||||| | ||||| Sbjct 2974573 AACGGCATCCTCAACGTCTCCGCCGTCGAGAAGTCCACGGGCAAGGAGCAGAAGATCACC 2974514 Query 196793 ATTACCAATGACAAGGGGCGGCTTTCTAAGGAGGAAATTGAACGTATGGTTCAAGATGCG 196852 || | || |||||||| || || || |||| || || || || ||||| | || || Sbjct 2974513 ATCAAGAACGACAAGGGCCGCCTCTCGCAGGACGAGATCGACCGCATGGTCGACGAGGCC 2974454 Query 196853 GAAAAGTACAGGGAAGAAGACGAGG 196877 || |||| || || ||||||| Sbjct 2974453 GAGCGCTACAAGGCCGAGGACGAGG 2974429 >seq4 Length=3024044 Score = 136 bits (150), Expect = 5e-27 Identities = 165/225 (73%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 171864 GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGA 171923 ||| ||||| ||||||||||| || || || || ||||| ||||| || ||| || || Sbjct 2040110 GCAGATCTTCGTGAAAACCCTGACGGGCAAGACGATCACGCTCGACGTCGAGCCGAGCGA 2040051 Query 171924 CACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCA 171983 ||| ||||| ||| | || ||||| || || ||||| ||||| || || || ||||| Sbjct 2040050 CACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCA 2039991 Query 171984 ACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAACGT 172043 ||| | || || || || || ||||| || || || || |||||| || |||||| | Sbjct 2039990 GCGATTGATCTTCGCGGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAACAT 2039931 Query 172044 TCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 || |||||||| || || ||||| || || |||| || || || Sbjct 2039930 CCAGAAGGAGTCGACGCTCCACCTCGTGCTCCGGCTCCGCGGCGG 2039886 >seq6 Length=2755913 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| || || || ||||| || || || || ||||| ||||| || ||| || Sbjct 2370893 ATGCAAATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCGAGC 2370834 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| | || || || || || ||||| ||||| || || || ||| Sbjct 2370833 GACACCATCGACAACGTGAAGCAAAAAATACAGGACAAGGAGGGCATCCCGCCGGACCAG 2370774 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || || || || || || || ||||| || || || || |||||| || |||||| Sbjct 2370773 CAGCGGCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAAC 2370714 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | ||||||||||| || || ||||| || || |||| || || || Sbjct 2370713 ATCCAAAAGGAGTCGACGCTCCACCTCGTGCTCCGGCTGCGCGGCGG 2370667 >seq10 Length=1654512 Score = 113 bits (124), Expect = 6e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 171889 GGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGACACAATCGATAACATCAAAGCCAAG 171948 || || || ||||| ||||| || ||| | ||||| ||||| ||| | || ||| Sbjct 452513 GGCAAGACCATCACGCTCGACGTCGAGCCCAGCGACACCATCGACAACGTGAAGCAGAAG 452572 Query 171949 ATTCAAGATAAGGAAGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAG 172008 || || || ||||| ||||| || || || |||||||| || ||||||||||| || ||| Sbjct 452573 ATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCAACGCCTCATTTTTGCTGGCAAGCAG 452632 Query 172009 CTTGAAGATGGACGTACCCTCGCTGATTACAACGTTCAAAAGGAGTCTACTCTACACCTT 172068 || || || || || |||||| | || |||||| | || || ||| || || ||||| Sbjct 452633 CTCGAGGACGGCCGCACCCTCTCCGACTACAACATCCAGAAAGAGAGCACGCTGCACCTC 452692 Query 172069 GTTCTAAGGCTTCGGGGTGG 172088 || || |||| || || || Sbjct 452693 GTGCTCCGGCTGCGCGGCGG 452712 >seq16 Length=966663 Score = 111 bits (122), Expect = 2e-19 Identities = 120/159 (75%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 171864 GCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCAGA 171923 ||| ||||| ||||||||||| || || || || ||||| ||||| || ||| |||| || Sbjct 441839 GCAGATCTTCGTGAAAACCCTCACCGGCAAGACGATCACGCTCGACGTCGAGCCGTCCGA 441898 Query 171924 CACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAGCA 171983 ||| ||||| ||| |||| ||||| || || ||||| ||||| || || || ||||| Sbjct 441899 CACGATCGACAACGTCAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 441958 Query 171984 ACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 || || || || || || || ||||| || || || || Sbjct 441959 GCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGGCG 441997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657852655413200