Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq19 190 5e-43 seq2 152 1e-31 seq9 113 1e-19 seq25 95.1 3e-14 >seq19 Length=762245 Score = 190 bits (210), Expect = 5e-43 Identities = 207/275 (75%), Gaps = 0/275 (0%) Strand=Plus/Plus Query 46109 ATTGCAACAGTAATTGCGCAACCTGCGCTAGGACCGTCTTTTGGAGTCGCTCCTTCAGGA 46168 ||||||||||||||||| || || ||| |||||||| || || |||||||| ||| Sbjct 596233 ATTGCAACAGTAATTGCAGTTCCGGCCGAAGGTCCGTCTTTCGGTGTGGCTCCTTCTGGA 596292 Query 46169 ACATGAATATGCAAGTCGGTGTTTTTTAGTTTCTGTGCTAGTTTATTTTGATCTCTAGGA 46228 || |||||||| | || || ||||| | || |||| | ||| |||||| |||||| Sbjct 596293 ACGTGAATATGTAGATCCGTATTTTTCATCTTTTGTGAGATCTTAGTTTGATTTCTAGGG 596352 Query 46229 CTCATCAGACTCCACGCTACACTTTTAGCAACAGCCATCGACTCTTTCATAACGTCTCCC 46288 |||| ||||| || |||||||| || || |||||||| ||||||||||| ||||| Sbjct 596353 TCAATCAAGCTCCATGCAACACTTTTGGCGACGGCCATCGATTCTTTCATAACATCTCCT 596412 Query 46289 TGCATTCCAGTAAGTTTCAAATTCATAGTAGTATTAGATGGAATGAACTTGGTCTCAATA 46348 |||||||| || ||| ||| || ||| ||||| || || ||| | || || ||||| Sbjct 596413 TGCATTCCCGTCAGTCTCAGGCCCAGAGTCGTATTCGAAGGGATGTATTTTGTTTCAATG 596472 Query 46349 ACAGTAAGGCCACCAACTCCATTAGAACAAGCATA 46383 || || || |||||| ||||||||| || || || Sbjct 596473 ACCGTGAGACCACCAGTTCCATTAGAGCATGCGTA 596507 Score = 86.0 bits (94), Expect = 1e-11 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 327208 TCTAACGCCTGACAGGCGATGCGCCCTTAAGCCTCAACAAGGAGGCTTCACAAAGCTaaa 327267 |||||||||| ||||||||| |||||| || |||||||||||||| |||||||| ||||| Sbjct 34409 TCTAACGCCTAACAGGCGATTCGCCCTGAATCCTCAACAAGGAGGATTCACAAACCTAAA 34468 Query 327268 aa 327269 || Sbjct 34469 AA 34470 >seq2 Length=3465789 Score = 152 bits (168), Expect = 1e-31 Identities = 291/426 (68%), Gaps = 2/426 (0%) Strand=Plus/Plus Query 193428 ATTTTCTTAACGAAATTTGATCTTTTTACGTCGTCTTTGTCGAATTCGACGATTGCTATA 193487 || || || || || | ||| | ||||| ||| | || || ||||| | |||| || | Sbjct 2496695 ATCTTTTTTACAAACTCTGACCGTTTTATGTCACCCTTTTCCAATTCTATCATTGATAGA 2496754 Query 193488 CCATTTGCAAACATTTTCCAATAATAAGCAGAATATGTCAAATATAACTTTCTTCTTAGA 193547 |||| ||||||||||| ||| | || || ||| ||||||| || |||| | | | Sbjct 2496755 CCATCCTGGAACATTTTCCAGTAAAATGCCGAGTATTTCAAATACAATTTTCGTGTAAAG 2496814 Query 193548 TCAATAAGTCCATTTACAT-TGTCTTCATAATCGGATTGATTTAAATCACCTGTAATTAT 193606 || | | ||| | || | | | || | | || ||||| ||||| || || || Sbjct 2496815 TCGGTCAATCCGTCTATGTCTATGTTTAGA-TCACTTTGATCCTTGTCACCAGTTATGAT 2496873 Query 193607 TATTTTTGAATTTTCTCCTAATCTTGTTAGCAGCATCTTCATTTGCATTGGCGTCGAATT 193666 ||||| ||||| | |||| ||| |||| || ||||||||||||| || | ||||| Sbjct 2496874 AATTTTAGAATTCTTCCCTATTCTGGTTAACAACATCTTCATTTGCGCAGGACTTGAATT 2496933 Query 193667 TTGCATTTCATCAGCGATTATTATTGTATTTTTAAACGATAATCCTCTCATAAAACCAAG 193726 |||||||||||||| |||||||| |||| | ||| | ||||||||||| || || | Sbjct 2496934 CTGCATTTCATCAGCAATTATTATGGTATCATCAAAAGTCAATCCTCTCATGAATCCCAA 2496993 Query 193727 TGGGATAAAATTAATTTTTTCTTTGCAACAATCATGTTTTTGAATATATTGGGTAATGCT 193786 || | || | ||||| |||| |||||| | | ||| | | || | || ||| Sbjct 2496994 AGGAAGGAATTCTATTTTATCTTCACAACAACCGTATTTCTTTAAGTAATCTGTCATGGA 2497053 Query 193787 TGATGAAAAAGGTGAGATTTTTTCATTGATCCCACCAGGCAAAAAACCAATCTCTTCACT 193846 | | | ||||||| || || ||| ||| | || || | ||| || || |||||| | Sbjct 2497054 TTTTCCATAAGGTGAAATCTTATCACTGACATCCCCCGGGAGAAAGCCGATTTCTTCATT 2497113 Query 193847 TTCAAC 193852 ||| || Sbjct 2497114 TTCTAC 2497119 Score = 118 bits (130), Expect = 3e-21 Identities = 79/88 (90%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 184106 CAAGCCGATCACCTGCGCTCAGGTCGCGCGGAACCCCGGCCGCCGCTGCGGCCTCGACGG 184165 |||| |||||||||| | |||||||||||||||||||||||||||||||||||||| Sbjct 1745295 CAAGAGGATCACCTGCATCAACGTCGCGCGGAACCCCGGCCGCCGCTGCGGCCTCGACGG 1745354 Query 184166 CGCCGCGGACGCGTGCGCGGCGACGTGC 184193 ||||||||||||||||||| ||||||| Sbjct 1745355 CGCCGCGGACGCGTGCGCGAAGACGTGC 1745382 Score = 87.8 bits (96), Expect = 4e-12 Identities = 82/102 (80%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 184093 TCAACAATAAAGGCAAGCCGATCACCTGCGCTCAG-GTCGCGCGGAACCCCGGCCGCCGC 184151 ||||||| || |||||| | || |||| || || |||||||||||||| | ||| ||| Sbjct 1617256 TCAACAAGAAGGGCAAGAAGGTCGACTGC-CTGAGCGTCGCGCGGAACCCGGACCGGCGC 1617314 Query 184152 TGCGGCCTCGACGGCGCCGCGGACGCGTGCGCGGCGACGTGC 184193 ||||| ||||||||||| | | ||||||| ||||| ||||| Sbjct 1617315 TGCGGGCTCGACGGCGCGGAAGCCGCGTGCCCGGCGTCGTGC 1617356 >seq9 Length=1602328 Score = 113 bits (124), Expect = 1e-19 Identities = 87/101 (86%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 184094 CAACAATAAAGGCAAGCCGATCACCTGCGCTCAG-GTCGCGCGGAACCCCGGCCGCCGCT 184152 |||||| || |||| | || ||||| |||| |||||||||||||||| |||||||| Sbjct 822343 CAACAAGAAGAACAAGAAGCTCGACTGCG-TCAGCGTCGCGCGGAACCCCGCCCGCCGCT 822285 Query 184153 GCGGCCTCGACGGCGCCGCGGACGCGTGCGCGGCGACGTGC 184193 |||||||||||||||||||||||||||||||| ||||||| Sbjct 822284 GCGGCCTCGACGGCGCCGCGGACGCGTGCGCGCGGACGTGC 822244 >seq25 Length=552203 Score = 95.1 bits (104), Expect = 3e-14 Identities = 83/101 (82%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 184094 CAACAATAAAGGCAAGCCGATCACCTGCGCTCAG-GTCGCGCGGAACCCCGGCCGCCGCT 184152 |||||| || |||| | || ||||| |||| ||||||||||||||||||||||||| Sbjct 486222 CAACAAGAAGAACAAGAAGCTCGACTGCG-TCAGCGTCGCGCGGAACCCCGGCCGCCGCT 486164 Query 184153 GCGGCCTCGACGGCGCCGCGGACGCGTGCGCGGCGACGTGC 184193 ||||||| ||| ||||||||||||||| ||||||||| Sbjct 486163 GCGGCCTGTCCGGTGCCGCGGACGCGTGCCGCGCGACGTGC 486123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186794780843785