Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq28 104 2e-17 seq26 104 2e-17 seq6 104 2e-17 seq10 98.7 7e-16 seq5 89.7 3e-13 >seq28 Length=462849 Score = 104 bits (114), Expect = 2e-17 Identities = 137/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||| ||| ||||| |||| || | || || || || || Sbjct 34180 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCCGCGAA 34121 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | ||||||||||| | || | || || ||||| || ||||| |||| | Sbjct 34120 AATGAGGCGCTGCTGATCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 34061 Query 33678 AGTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 | | ||||||||| | || ||||| | ||||||||| ||||| || | |||||| || Sbjct 34060 ATCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTTACCGGTGAGCGTTTTGAC 34001 Query 33738 AAAGATCTGC 33747 ||||||||| Sbjct 34000 GAAGATCTGC 33991 >seq26 Length=549629 Score = 104 bits (114), Expect = 2e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||| ||| ||||| |||| || | || || ||||| || Sbjct 459837 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 459896 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||||| |||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 459897 GATCAATCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 459955 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||||| | || ||||| | ||||||||| || || || | ||| || | Sbjct 459956 TGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTTCCCGGTGAGCGTCTTGA 460015 Query 33737 CAAAGATCTGCATAGT 33752 | ||||||||||| || Sbjct 460016 CGAAGATCTGCATGGT 460031 >seq6 Length=2755913 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||||||||| |||||||| ||| || || || |||| || | || || |||||||| Sbjct 2370930 CTCTTTTTGGATGTTGTAGTCGCTCAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCAAA 2370989 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 ||| | |||||||| || |||| | || || ||||| ||||| || ||| || | Sbjct 2370990 AATGAGCCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCTTGGATTTTTTGCTTC-ACGT 2371048 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | ||||||||| | || ||||| | ||||||||| || || || | || || | Sbjct 2371049 TGTCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGA 2371108 Query 33737 CAAAGATCTGC 33747 | ||||||||| Sbjct 2371109 CGAAGATCTGC 2371119 >seq10 Length=1654512 Score = 98.7 bits (108), Expect = 7e-16 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||||||||||| || |||||||| |||||||| ||||| |||| || | || Sbjct 452688 TGCAGCGTGCTCTCTTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCGTCCTCGAGCTGC 452629 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 || || |||||||| | || ||||| || | || | || || ||||| || ||| Sbjct 452628 TTGCCAGCAAAAATGAGGCGTTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 452569 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCT 33723 || ||| || | ||| | ||||||||| | || ||||| | |||||| || || ||| Sbjct 452568 TGCTTC-ACGTTGTCGATGGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCT 452512 >seq5 Length=3000003 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/206 (70%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 33558 CTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAA 33617 ||| || || |||||||| ||| ||| ||||| | || || | || || || || || Sbjct 733111 CTCCTTCTGGATGTTGTAGTCGCTGAGCGTGCGGCCATCCTCGAGCTGCTTGCCCGCGAA 733170 Query 33618 AATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACAT 33677 |||| |||||||| || | || | || || ||||| || ||||| |||| | | Sbjct 733171 GATCAGGCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGT 733229 Query 33678 AGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTA 33736 ||| | |||||||| | || ||||| | |||||| || || || || | ||| || | Sbjct 733230 TGTCGATCGTGTCGCTGGGCTCGACGTCGAGCGTGATGGTCTTGCCCGTGAGCGTCTTGA 733289 Query 33737 CAAAGATCTGCATAGTTGGTGTGTTT 33762 | ||||||||||| || | ||| ||| Sbjct 733290 CGAAGATCTGCATGGTGGCTGTTTTT 733315 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328699252795200