Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq26 95.1 8e-15 seq2 86.0 4e-12 seq6 84.2 1e-11 seq10 82.4 5e-11 >seq26 Length=549629 Score = 95.1 bits (104), Expect = 8e-15 Identities = 164/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| | || || | ||| | ||||| || |||||| || ||||| || || Sbjct 459800 CGCCGCCGCGGAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGC 459859 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || || ||||| |||||||| | Sbjct 459860 TGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAATCGCTGCTGGTCCGGGG 459919 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||||| || || ||| | || ||||| | ||| Sbjct 459920 GGATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTGTCGATCGTGTCGCTGGGCTCG 459978 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTGAT 34712 || || | || ||||| || ||||| | ||| || || || ||||||||| |||| Sbjct 459979 ACGTCGAGCGTGATCGTCTTCCCGGTGAGCGTCTTGACGAAGATCTGCATGGTGAT 460034 >seq2 Length=3465789 Score = 86.0 bits (94), Expect = 4e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 34474 TCGTCGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAA 34533 ||| ||||||| | || || | ||| | ||||| ||||||||||| || ||||| || Sbjct 3141450 TCGGCGCCGCCGCGGAGGCGGAGCACGAGGTGGAGCGTGCTCTCCTTCTGGATGTTGTAG 3141391 Query 34534 TCTGAAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCC 34593 || || || || |||| || || || || || || || || || ||||| |||||| Sbjct 3141390 TCGCTGAGCGTGCGGCCGTCCTCGAGCTGCTTCCCCGCGAAGATCAATCGCTGCTGGTCC 3141331 Query 34594 GGCGGCACTCCCTCCTTGTCTGTGATCTTTTGTTT 34628 || || | ||||||||||| |||||| || || Sbjct 3141330 GGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTT 3141296 >seq6 Length=2755913 Score = 84.2 bits (92), Expect = 1e-11 Identities = 162/231 (70%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | ||| | ||||| || ||||||||| ||||| || || Sbjct 2370666 GCCGCCGCGCAGCCGGAGCACGAGGTGGAGCGTCGACTCCTTTTGGATGTTGTAGTCGCT 2370725 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| || || || || ||||| ||||| | ||||| ||||||||||| Sbjct 2370726 GAGGGTCCGGCCGTCCTCGAGCTGCTTCCCGGCGAATATGAGCCGCTGCTGGTCCGGCGG 2370785 Query 34599 CACTCCCTCCTTGT-CTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTC 34655 | |||||||||| |||| || ||||| || ||| | || ||||| ||| ||| Sbjct 2370786 GATGCCCTCCTTGTCCTGT-ATTTTTTG-CTTCACGTTGTCGATGGTGTCGCTCG-GCTC 2370842 Query 34656 CACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || ||||| || || || | || || || ||||| ||||| Sbjct 2370843 GACGTCGAGCGTGATCGTCTTCCCCGTCAGGGTCTTGACGAAAATTTGCAT 2370893 >seq10 Length=1654512 Score = 82.4 bits (90), Expect = 5e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| ||||||||||| || ||||| || || || || || || |||| || || || Sbjct 862625 TGGAGCGTGCTCTCCTTCTGGATGTTGTAGTCCGAGAGCGTGCGGCCGTCCTCGAGCTGC 862684 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || || || || || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 862685 TTGCCCGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTC 862744 Query 34624 TGTTT 34628 || || Sbjct 862745 TGCTT 862749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314725054616105