Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq6 107 2e-18 seq4 104 2e-17 seq26 98.7 9e-16 seq10 93.3 4e-14 seq240 87.8 2e-12 seq34 87.8 2e-12 seq28 87.8 2e-12 seq5 84.2 2e-11 >seq6 Length=2755913 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || || ||||| || ||| | || || || || || || ||| | Sbjct 2370893 ATGCAAATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCGAGC 2370834 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || |||||||| || ||||| || ||||| || || || || Sbjct 2370833 GACACCATCGACAACGTGAAGCAAAAAATACAGGACAAGGAGGGCATCCCGCCGGACCAG 2370774 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | |||| |||||| || || | || ||| | |||| | ||| |||||| Sbjct 2370773 CAGCGGCTCATATTCGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAAC 2370714 Query 27168 ATTCAAAAGGAGTCGAC 27184 || |||||||||||||| Sbjct 2370713 ATCCAAAAGGAGTCGAC 2370697 >seq4 Length=3024044 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| || || ||||| ||||| |||||| | || || || || || || ||| ||| Sbjct 2040110 GCAGATCTTCGTGAAAACCCTGACGGGCAAGACGATCACGCTCGACGTCGAGCCGAGCGA 2040051 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | |||| || | || || || || || || ||||| || ||||| || || || || || Sbjct 2040050 CACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCTGACCAGCA 2039991 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 ||| || || | ||| || || || | || ||| | |||| | ||| |||||||| Sbjct 2039990 GCGATTGATCTTCGCGGGGAAGCAGCTCGAGGACGGCCGGACCCTCAGCGACTACAACAT 2039931 Query 27170 TCAAAAGGAGTCGAC 27184 || ||||||||||| Sbjct 2039930 CCAGAAGGAGTCGAC 2039916 >seq26 Length=549629 Score = 98.7 bits (108), Expect = 9e-16 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || ||||| ||| | || || || || || || || Sbjct 460030 CCATGCAGATCTTCGTCAAGACGCTCACCGGGAAGACGATCACGCTCGACGTCGAGCCCA 459971 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| || | || || || || || || ||||| || ||||| || || || | Sbjct 459970 GCGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACC 459911 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| || || | ||||||||| || | || ||| | || | ||| |||| Sbjct 459910 AGCAGCGATTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACA 459851 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 459850 ACATCCAGAAGGAGTCGAC 459832 >seq10 Length=1654512 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || || || || || Sbjct 862147 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCC 862088 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || || || || ||||| || ||||| || || || Sbjct 862087 CTCGGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 862028 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || | || ||| | || | ||| || Sbjct 862027 CCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTA 861968 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 861967 CAACATCCAGAAGGAGTCGAC 861947 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || || || || || Sbjct 862375 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCC 862316 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || || || || ||||| || ||||| || || || Sbjct 862315 CTCGGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 862256 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || | || ||| | || | ||| || Sbjct 862255 CCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTA 862196 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 862195 CAACATCCAGAAGGAGTCGAC 862175 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || |||||| | || || || || || || || Sbjct 862603 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCC 862544 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || || || || ||||| || ||||| || || || Sbjct 862543 CTCGGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 862484 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || | || ||| | || | ||| || Sbjct 862483 CCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTA 862424 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 862423 CAACATCCAGAAGGAGTCGAC 862403 >seq240 Length=9970 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || ||||| | || || || || ||||| || || Sbjct 1283 CATGCAGATCTTCGTCAAGACGCTCACGGGCAAAACCATCACGCTCGACGTGGAGCCCTC 1342 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || || ||||| || ||||| || || || || Sbjct 1343 GGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 1402 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || || | || | ||| ||||| Sbjct 1403 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAA 1462 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 1463 CATCCAGAAGGAGTCGAC 1480 >seq34 Length=376640 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || || || ||||| | || || || || ||||| || || Sbjct 72938 CATGCAGATCTTCGTCAAGACGCTCACGGGCAAAACCATCACGCTCGACGTGGAGCCCTC 72879 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| |||| || | || || || || || || ||||| || ||||| || || || || Sbjct 72878 GGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 72819 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || | || || | || | ||| ||||| Sbjct 72818 GCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACAA 72759 Query 27167 CATTCAAAAGGAGTCGAC 27184 ||| || ||||||||||| Sbjct 72758 CATCCAGAAGGAGTCGAC 72741 >seq28 Length=462849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 26984 CGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACC 27043 || ||||||||| || || || || || || || ||| | || || || || || || || Sbjct 34542 CGGCATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACGCTCGACGTCGAGCC 34601 Query 27044 GTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGA 27103 || ||| |||| || | || || || || || || ||||| || ||||| || || || Sbjct 34602 CTCGGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGA 34661 Query 27104 TCAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTA 27163 || ||||| | || | ||| ||||| || | || ||| | || | ||| || Sbjct 34662 CCAGCAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTA 34721 Query 27164 CAACATTCAAAAGGAGTCGAC 27184 |||||| || ||||||||||| Sbjct 34722 CAACATCCAGAAGGAGTCGAC 34742 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 26990 GCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGA 27049 |||||| || || ||||| || ||||| ||| | || || || || || || || ||| Sbjct 33991 GCAGATCTTCGTCAAAACGCTCACCGGTAAGACGATCACGCTCGACGTCGAGCCCAGCGA 34050 Query 27050 CTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACA 27109 | | || || | || || || || || || ||||| || ||||| || || ||||| || Sbjct 34051 CACCATCGATAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCAGCA 34110 Query 27110 GCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACAT 27169 ||| | || | ||| ||||| || | || ||| | || | ||| |||||||| Sbjct 34111 GCGCCTCATTTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 34170 Query 27170 TCAAAAGGAGTCGAC 27184 || ||||||||||| Sbjct 34171 CCAGAAGGAGTCGAC 34185 >seq5 Length=3000003 Score = 84.2 bits (92), Expect = 2e-11 Identities = 138/199 (69%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 26986 CCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGT 27045 |||||||||| || || || || || || |||||| | || || || || || || || Sbjct 733304 CCATGCAGATCTTCGTCAAGACGCTCACGGGCAAGACCATCACGCTCGACGTCGAGCCCA 733245 Query 27046 CCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATC 27105 |||| |||| || | || || || || || || ||||| || ||||| || || || | Sbjct 733244 GCGACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCTCCGGACC 733185 Query 27106 AACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACA 27165 | ||||| | || | ||| ||||| || | || || | || | ||| |||| Sbjct 733184 AGCAGCGCCTGATCTTCGCGGGCAAGCAGCTCGAGGATGGCCGCACGCTCAGCGACTACA 733125 Query 27166 ACATTCAAAAGGAGTCGAC 27184 |||| || ||||||||||| Sbjct 733124 ACATCCAGAAGGAGTCGAC 733106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434911957771200