Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq30 262 4e-65 >seq30 Length=470201 Score = 262 bits (290), Expect = 4e-65 Identities = 494/714 (69%), Gaps = 23/714 (3%) Strand=Plus/Plus Query 34151 GGGGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACAC--AGGCCCGATACAACC 34208 || ||||| || || ||||| ||| ||||| | |||||| | | | | || | || || Sbjct 313838 GGCGACCGCACGGGCACGGGCACCATCTCCATCTTCGGCGCGCGCATGTCC--TTCAGCC 313895 Query 34209 TTCGGGGCGAA---TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCG 34265 | ||| ||| || || |||||||||||||| || || | |||| ||||| | || Sbjct 313896 TCCGGAACGACCGGTTCCCCCTGCTGACGACGAAGCGCGTCTTCTGGCGCGGCGTCGCCG 313955 Query 34266 AGGAGCTGCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGG 34325 ||||||| | ||||||||||| ||| | |||||| ||| || || | ||| Sbjct 313956 AGGAGCTCGTCTGGTTCGTGAGCGGGTCGACGAACGGGAAGCTCCTGGCGGACAAGGGCA 314015 Query 34326 TGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTC--CCATC 34383 | | |||||||||| ||||| || || || || ||| |||||| | ||| | Sbjct 314016 TCCACATCTGGGACGGCAACGGGAGCCGCGAGTTCCTCGACCGGCGGGGCCTGGGCCACC 314075 Query 34384 TCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGA 34443 || ||||| ||| ||||||| |||||||| ||||||||| | ||||| || || | Sbjct 314076 GCG--AGGAGATGGACCTGGGCCCCGTCTACGGCTTCCAGTGGCGCCACTTCGGCGCCAA 314133 Query 34444 GTA--TCGGGG-GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCT-GCAGTACG 34499 ||| ||| | | ||| |||| |||| |||| | ||||||||| || | | Sbjct 314134 GTACGTCGACATGCACAAAG---ACTACGCGGGCGAGGGCGTGGACCAGCTCGCGGCCTG 314190 Query 34500 TGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACC 34559 | |||| ||| | |||| | |||| | | | ||||| ||| ||||||||||| Sbjct 314191 CG-TCGAGACCATCAAGCAGGACCCGAACTCGCGGCGCATCGTCCTGTCCGCGTGGAACC 314249 Query 34560 CGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCG 34619 | ||| ||| ||||||||| || |||||||||| ||||||| |||||||||| Sbjct 314250 CCGCGGACCTCGACGAGATGGCGCTGCCGCCGTGCCACATGTTCTGCCAGTTCTACGTCG 314309 Query 34620 CGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGC 34679 |||| || ||||| ||||||||| | || || || || | |||||||| | || |||| Sbjct 314310 CGAACGGCGAGCTCTCCTGCCAGATGTACCAGCGGTCCGCGGACATGGGCCTCGGCGTGC 314369 Query 34680 CGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGG 34739 | |||||||| || ||||| || |||||| |||| |||| || | | ||| | Sbjct 314370 CCTTCAACATCGCGTCCTACGCGCTCCTCACGCGCATGGTCGCGCAGGCCACGGGCCTAA 314429 Query 34740 TTCCTGGGGAGCTGGTGCATACGT--TGGGGGATGCGCATATCTACCTGAACCACATCGA 34797 || || || | || | |||| | || || ||||| ||||| ||||||| |||| Sbjct 314430 AGCCGGGCGACTTCGTCC--ACGTCATCGGCGACGCGCACGTCTACTCGAACCACGTCGA 314487 Query 34798 GCGGCTCCGGATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCTCAAAAT 34851 |||| | ||||||| || || |||||||| || ||||| ||||| ||| Sbjct 314488 CGCGCTCAAGGTCCAGCTCCAGCGCGAGCCCCGGCCCTTCCCGACGCTCACAAT 314541 Score = 262 bits (290), Expect = 4e-65 Identities = 494/714 (69%), Gaps = 23/714 (3%) Strand=Plus/Minus Query 6494 ATTTTGAGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATG 6553 ||| ||||| ||||| || |||||||| || || ||||||| | |||| |||| | Sbjct 314541 ATTGTGAGCGTCGGGAAGGGCCGGGGCTCGCGCTGGAGCTGGACCTTGAGCGCGTCGACG 314482 Query 6554 TGGTTCAGGTAGATATGCGCATCCCCCA--ACGTATGCACCAGCTCCCCAGGAACCAACC 6611 |||||| ||||| ||||| || || | |||| | || | || || || | | Sbjct 314481 TGGTTCGAGTAGACGTGCGCGTCGCCGATGACGT--GGACGAAGTCGCCCGGCTTTAGGC 314424 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 || | | || |||| |||| |||||| || ||||| || |||||||| ||||| | Sbjct 314423 CCGTGGCCTGCGCGACCATGCGCGTGAGGAGCGCGTAGGACGCGATGTTGAAGGGCACGC 314364 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGT 6731 | | |||||||| | || || || || | ||||||||| ||||| || |||||||||| Sbjct 314363 CGAGGCCCATGTCCGCGGACCGCTGGTACATCTGGCAGGAGAGCTCGCCGTTCGCGACGT 314304 Query 6732 AGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC 6791 |||| ||||||| |||||||||| || ||||||||| ||| ||| ||||||| Sbjct 314303 AGAACTGGCAGAACATGTGGCACGGCGGCAGCGCCATCTCGTCGAGGTCCGCGGGGTTCC 314244 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851 ||||| ||| ||||| | | | |||| | |||| | ||| |||| | | | Sbjct 314243 ACGCGGACAGGACGATGCGCCGCGAGTTCGGGTCCTGCTTGATGGTCTCGA-CGCAGGCC 314185 Query 6852 GC-AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTC-CCCCGA--TACTCCGCC 6907 || ||||||||| | |||| |||| |||| ||| | | ||| |||| || Sbjct 314184 GCGAGCTGGTCCACGCCCTCGCCCGCGTAGT---CTTTGTGCATGTCGACGTACTTGGCG 314128 Query 6908 CCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGG- 6966 || ||||| | ||||||||| |||||||| ||||||| ||| ||||| || | ||| Sbjct 314127 CCGAAGTGGCGCCACTGGAAGCCGTAGACGGGGCCCAGGTCCATCTCCT--CGCGGTGGC 314070 Query 6967 -GAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCC 7025 | |||||| ||| || || || || ||||| |||||||||| | | ||| Sbjct 314069 CCAGGCCCCGCCGGTCGAGGAACTCGCGGCTCCCGTTGCCGTCCCAGATGTGGATGCCCT 314010 Query 7026 GGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCA 7085 | || || ||| |||||| | ||| ||||||||||| | ||||||||| | | Sbjct 314009 TGTCCGCCAGGAGCTTCCCGTTCGTCGACCCGCTCACGAACCAGACGAGCTCCTCGGCGA 313950 Query 7086 CGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA---TTCGCCCCGAAGGTTGT 7142 |||| |||| | || || |||||||||||||| || || ||| ||| ||| || Sbjct 313949 CGCCGCGCCAGAAGACGCGCTTCGTCGTCAGCAGGGGGAACCGGTCGTTCCGGAGGCTGA 313890 Query 7143 ATCGGGCCT--GTGTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCCCC 7194 | || | | | | |||||| | ||||| ||| ||||| || || ||||| || Sbjct 313889 A--GGACATGCGCGCGCCGAAGATGGAGATGGTGCCCGTGCCCGTGCGGTCGCC 313838 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448255760113200