Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq6 113 3e-20 seq28 104 2e-17 seq10 104 2e-17 seq2 95.1 8e-15 >seq6 Length=2755913 Score = 113 bits (124), Expect = 3e-20 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||| ||||| || ||||| ||||| || |||||||| ||||| || || ||| || Sbjct 2371119 GCAGATCTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGACGTCGAGCCCAGCGA 2371060 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | | || |||||||| ||||| || || | ||||| || || || Sbjct 2371059 CACCATCGACAACGTGAAGCAAAAAATCCAAGACAAGGAGGGCATCCCGCCGGACCAGCA 2371000 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 ||| | || |||||||| || || || || |||| || || | |||| |||||||| Sbjct 2370999 GCGGCTCATTTTTGCCGGGAAGCAGCTCGAGGACGGCCGGACCCTGAGCGACTACAACAT 2370940 Query 23793 ACAAAAAGAGTCCAC 23807 ||||||||||| || Sbjct 2370939 CCAAAAAGAGTCGAC 2370925 >seq28 Length=462849 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || || Sbjct 34546 ATGCAGATCTTCGTCAAGACCCTCACGGGGAAGACGATCACGCTCGACGTCGAGCCCTCG 34605 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 34606 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 34665 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 34666 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 34725 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 34726 ATCCAGAAGGAGTCGAC 34742 >seq10 Length=1654512 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || || Sbjct 862143 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCCCTCG 862084 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 862083 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 862024 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 862023 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 861964 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 861963 ATCCAGAAGGAGTCGAC 861947 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || || Sbjct 862371 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCCCTCG 862312 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 862311 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 862252 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 862251 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 862192 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 862191 ATCCAGAAGGAGTCGAC 862175 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||||||||| || |||||||| ||||| || || || || Sbjct 862599 ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACGCTCGACGTCGAGCCCTCG 862540 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || || | || || || || Sbjct 862539 GACACGATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 862480 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || || || |||| ||||| | |||| |||||| Sbjct 862479 CAGCGCCTCATCTTCGCGGGCAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAAC 862420 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 862419 ATCCAGAAGGAGTCGAC 862403 >seq2 Length=3465789 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23613 GCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGA 23672 |||||||||||| || ||||| ||||| || |||||||| ||||| || || ||| || Sbjct 661033 GCAGATTTTCGTCAAGACCCTGACGGGGAAGACGATCACGCTCGATGTCGAGCCCAGCGA 660974 Query 23673 CACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACA 23732 ||| | || | | || || || || ||||| || || | || || || || || Sbjct 660973 CACCATCGACAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAGCA 660914 Query 23733 GCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACAT 23792 ||| | || || ||||| || || || || |||| ||||| | |||| |||||||| Sbjct 660913 GCGCCTCATCTTCGCCGGGAAGCAGCTCGAGGACGGCCGCACGCTCAGCGACTACAACAT 660854 Query 23793 ACAAAAAGAGTCCAC 23807 || || ||||| || Sbjct 660853 CCAGAAGGAGTCGAC 660839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338004718401980