Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aureococcus_20anophagefferens_20[genbank_20GCA_5F000186865.1_202011- 02-15] 1,185 sequences; 56,660,572 total letters Query= NC_031074.1 Length=92580 Score E Sequences producing significant alignments: (Bits) Value seq30 172 3e-38 seq8 91.5 9e-14 >seq30 Length=470201 Score = 172 bits (190), Expect = 3e-38 Identities = 265/369 (72%), Gaps = 12/369 (3%) Strand=Plus/Plus Query 1112 GACCAGATCTCGGCCGCCGTGGAGCTGCTTCGCG-AGGACCCTGACTCGCGCCGGAACGT 1170 |||||| || ||||| ||| ||| | || | ||||||| ||||||| || | ||| Sbjct 314174 GACCAGCTCGCGGCCTGCGTCGAGAC-CATCAAGCAGGACCCGAACTCGCGGCGCATCGT 314232 Query 1171 GGTATCCGCATGGAACGTCGGTGACCTCAGCGACATGGCACTTCACCCGTGCCACATCAT 1230 | ||||| |||||| || |||||| ||| ||||| || | ||||||||||| | Sbjct 314233 CCTGTCCGCGTGGAACCCCGCGGACCTCGACGAGATGGCGCTGCCGCCGTGCCACATGTT 314292 Query 1231 GTTCCAGCTGTACGTCGTCGACGGCCGGCTCTCGCTGC-AGGTCTACCAGCGCAGCGCGG 1289 | |||| | ||||||| ||||| |||||| |||| || | |||||||| ||||| Sbjct 314293 CTGCCAGTTCTACGTCGCGAACGGCGAGCTCTC-CTGCCAGATGTACCAGCGGTCCGCGG 314351 Query 1290 ACATGTTCCTCGGTGTGCCGTTCAATATCGCCTCGTACGCGCTCCTCGCGCACATGTTCG 1349 ||||| |||||| ||||| ||||| ||||| || |||||||||||| ||| |||| ||| Sbjct 314352 ACATGGGCCTCGGCGTGCCCTTCAACATCGCGTCCTACGCGCTCCTCACGCGCATGGTCG 314411 Query 1350 CGCAGCAGGCCGGCCTGCGGGTGGGTGAGCTGATCTGGACCGGCGGCGACTGCCACATCT 1409 ||||| | ||||| | ||| || | || | ||||||| ||| ||| Sbjct 314412 CGCAGGCCACGGGCCTAAAGCCGGGCGACTTCGTCCACGTCATCGGCGACGCGCACGTCT 314471 Query 1410 ACAACAACCACGTCGACCAGGCGCT---GATGCAGCTCCGCCGACGA-CCGCGGCCCTAC 1465 || |||||||||||| ||||| | | ||||||| || ||| || ||||||| | Sbjct 314472 ACTCGAACCACGTCGAC---GCGCTCAAGGTCCAGCTCCAGCG-CGAGCCCCGGCCCTTC 314527 Query 1466 CCGAGGCTC 1474 |||| |||| Sbjct 314528 CCGACGCTC 314536 >seq8 Length=1961717 Score = 91.5 bits (100), Expect = 9e-14 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 71278 GGCATCGACCTCGACGCCGTCCATGCCCTCGTCCAGGACGCGAACATGGCCAAGGCCAAC 71337 ||||| ||||| ||| ||| | | ||||||| | |||||||||||||||| |||| Sbjct 1275508 GGCATGAACCTCTCCGCGGTCTTCGGCGTCGTCCACGGCGCGAACATGGCCAAGCGCAAC 1275449 Query 71338 CCGGAGACCGGGAAGTTCGACAAG---GACCCGGCCGGCAAGATCATCAAGCCCGAGGGC 71394 |||| ||| || |||||||| ||| || | |||||||||||||||||| |||| Sbjct 1275448 CCGGCGACGGGCAAGTTCGAGAAGCGCGAGAGCGACGGCAAGATCATCAAGCCGCCGGGC 1275389 Query 71395 TGGACCGCCCCCGACGCCG 71413 ||| | | || |||| || Sbjct 1275388 TGGTCGCCGCCGGACGTCG 1275370 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 296126923217685