Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq54 111 3e-19 seq52 104 5e-17 seq51 104 5e-17 seq24 104 5e-17 seq16 104 5e-17 seq13 104 5e-17 seq5 104 5e-17 seq1 104 5e-17 >seq54 Length=642864 Score = 111 bits (122), Expect = 3e-19 Identities = 203/294 (69%), Gaps = 4/294 (1%) Strand=Plus/Minus Query 281788 TCGAC--CCAAACTGACCCTCCGGCAACAACCAGTTAATGTTATT-GCTCCCGACGTAAT 281844 ||||| || ||||||||| | || | ||| || ||||| || | |||| ||| | | Sbjct 344549 TCGACTTCCGAACTGACCCGCAGGGACGAACAGATTGATGTTGTTCGATCCC-ACGAAGT 344491 Query 281845 CCTGAGCCAGGTTGACGATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGT 281904 |||| |||| || ||| || | | || ||| ||| |||||||||||||| || Sbjct 344490 CCTGCGCCATTCCGATGATGGTGTCGTTGAGGGATTGCTCTCCGTGGTGATAGGCAGCGT 344431 Query 281905 GTTCGGCAACATAACCACTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGA 281964 | |||| ||||| ||| |||||| | || || | || || || | || || |||| Sbjct 344430 GCTCGGAGACATAGCCAGAGAACTGAACCACTTTGATTTCGGAGGTGAGCTTTCGCTTGA 344371 Query 281965 AAGCGCAATATAATACTTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGC 282024 | |||| | | ||||| || || |||||||||| ||| || ||||| | |||||| Sbjct 344370 AGGCGCCGAAGAGAACTTTGCGCTGGGAAGGCTTGAGACCGTCCACGACGCAGGGAATGG 344311 Query 282025 TGCGTTCCAGGTCATACCGCGAGAACAAAATAAGTTCCTTGTCAATGAAGTCGG 282078 ||| | || || || |||||| || || || ||||| |||||||||| Sbjct 344310 AGCGAGCGTTATCGTAGCGGGAGAACTGGATCAGCTCTTTGTCCATGAAGTCGG 344257 >seq52 Length=870417 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 177872 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 177813 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 177812 CCCCCGGTGGGC 177801 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 331439 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 331498 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 331499 CCCCCGGTGGGC 331510 >seq51 Length=900598 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 834846 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 834905 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 834906 CCCCCGGTGGGC 834917 >seq24 Length=1354787 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 1301701 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1301760 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 1301761 CCCCCGGTGGGC 1301772 >seq16 Length=243064 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 162592 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 162533 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 162532 CCCCCGGTGGGC 162521 >seq13 Length=1458350 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 1297940 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1297999 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 1298000 CCCCCGGTGGGC 1298011 >seq5 Length=491035 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 77446 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 77387 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 77386 CCCCCGGTGGGC 77375 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 179717 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 179658 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 179657 CCCCCGGTGGGC 179646 >seq1 Length=1966360 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 168087 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 168028 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 168027 CCCCCGGTGGGC 168016 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 698947 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 699006 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 699007 CCCCCGGTGGGC 699018 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||||||||||||||||| || |||| |||||||||| |||||||||| Sbjct 1875026 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1875085 Query 165770 CCCACGATGGGC 165781 ||| || ||||| Sbjct 1875086 CCCCCGGTGGGC 1875097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057823268118020