Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq1 109 4e-19 >seq1 Length=1966360 Score = 109 bits (120), Expect = 4e-19 Identities = 205/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Plus Query 18798 GGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGACTGTCAATCA 18857 ||||| ||||| || ||||| ||| | |||||||| |||| || ||| | | | || Sbjct 1769685 GGCCCGATTTATGGATTCCAATGGCGGCATTTTGGCGCGGCTTACGAAGGCAGAGA--CA 1769742 Query 18858 A--ACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATTAAAACAA 18915 | | || | | ||||| | ||||||||| || || || || | ||||| Sbjct 1769743 AGGATTACTCGAATCAAGGCGTGGATCAGCTGAAAGAAGTGATTCATTTGCTGAAAACCG 1769802 Query 18916 ACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCCTTAATGG 18975 | || | | ||||||||| ||| ||||| | |||||||| |||| | |||| Sbjct 1769803 ATCCGTATAACCGACGAATCATTTTATCGGCATGGAATCCGGCGGATTTGAGGAAGATGG 1769862 Query 18976 TACTACCTCCATGTCACACGTTATGT--CAGTTTTACGTTGCA-AACGGTGAATTATCCT 19032 | ||||||||| ||||| |||| || || || | |||| || || | ||||| | Sbjct 1769863 CGTTGCCTCCATGT--CACGTGATGTCCCAATTCTATG-TGCAGAATGGGTACTTATCGT 1769919 Query 19033 GCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGC 19087 |||| | ||||||||||||| ||||||||| ||||| || || |||||||| || Sbjct 1769920 GCCAGATGTACCAGAGATCGGCGGATATGGGTCTTGGCGTTCCATTCAACATCGC 1769974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399503737076430