Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq51 120 3e-22 seq52 105 7e-18 seq2 91.5 2e-13 >seq51 Length=900598 Score = 120 bits (132), Expect = 3e-22 Identities = 171/238 (72%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 40684 CGAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAA 40743 |||| |||||||| ||||| || || ||||| || || |||||||| | || ||||| Sbjct 382798 CGAAGCATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAG 382857 Query 40744 GCCACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGC 40802 | | |||| | | | |||| | |||| || |||| || || ||||| || ||| | Sbjct 382858 TCTTCGGACACCATCGAGAACG-TGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCC 382916 Query 40803 GGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGA 40862 || ||||| || || || | ||| || || ||||| || |||| ||||| || || Sbjct 382917 AGATCAGCAGCGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGA 382976 Query 40863 CTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 ||||||||||||||||||| |||| || || || ||| | || || | || || ||| Sbjct 382977 CTACAACATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTGCGTGGAGGAGGC 383034 >seq52 Length=870417 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || || |||||||| |||| || || | | Sbjct 711764 ATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCT 711823 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | |||| || |||| || || ||||| || ||| | || ||| Sbjct 711824 GACACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 711883 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || || | ||| || || ||||| || || | ||||| || ||||||||| Sbjct 711884 CAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 711943 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCGGC 40920 || ||||||||| |||| || || || ||| | || || | || || ||| Sbjct 711944 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGGAGGC 711994 >seq2 Length=1866585 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 || || || || || |||||||||| || |||| | | | |||| | |||| || Sbjct 1645997 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACG-TGAAGGCTAA 1646055 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 |||| ||||| ||||| || ||| | || ||||| || || || | ||| || || || Sbjct 1646056 GATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCA 1646115 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||| || || | ||||||||| ||||||||||| ||||||||| | || ||||| Sbjct 1646116 GCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCA 1646172 Score = 91.5 bits (100), Expect = 2e-13 Identities = 128/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 || || || || || |||||||||| || |||| | | | |||| | |||| || Sbjct 1768845 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACG-TGAAGGCTAA 1768787 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 |||| ||||| ||||| || ||| | || ||||| || || || | ||| || || || Sbjct 1768786 GATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCA 1768727 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||| || || | ||||||||| ||||||||||| ||||||||| | || ||||| Sbjct 1768726 GCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCA 1768670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515218852227040