Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq51 111 1e-19 seq52 107 2e-18 seq2 107 2e-18 >seq51 Length=900598 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || ||||| || || |||||||| || | |||||| ||||| Sbjct 383013 CACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCCTC 382954 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| ||||||||| | || |||||||||||||| || || || |||||||| || Sbjct 382953 GAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTG 382894 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||| || || || | |||| |||||||| |||||| || | || | || || Sbjct 382893 AATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTCTT 382834 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 || || ||||| || || || || |||||| Sbjct 382833 TCCAGTGAGAGTCTTAACGAAGATTTGCATG 382803 >seq52 Length=870417 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||| ||| | || ||||| || ||||||||||| || Sbjct 711990 CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAA 711931 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | |||||| |||||||||||| ||||||||| | || || ||||||||||| || || Sbjct 711930 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGA 711871 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || |||||||| || ||| || || || | |||| ||||| | ||| || Sbjct 711870 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACA 711811 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | || || || || || ||||| || || || ||||| Sbjct 711810 TCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || ||||||||||| || | ||| || |||||||||||| |||||| Sbjct 484757 GTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCCTCGAGCTGCTTTCCA 484816 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | |||||||||||| || || || ||||||||||| ||| || || Sbjct 484817 GCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTC 484876 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| ||| || | ||| || || | ||| | ||| || || |||| ||| Sbjct 484877 ACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTCTTTCCAGTCAAAGTC 484936 Query 118722 TTTACAAAAATCTGCAT 118738 ||||| ||||| ||||| Sbjct 484937 TTTACGAAAATTTGCAT 484953 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | | | ||||||||| | || ||||| || ||||||||||| || Sbjct 1646197 ACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 1646138 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||| ||||| ||||||||| | || |||||||||||||| || || Sbjct 1646137 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 1646078 Query 118631 TATGCCCTCCTTGTC 118645 || ||||||||||| Sbjct 1646077 AATTCCCTCCTTGTC 1646063 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 |||||| || | | | ||||||||| | || ||||| || ||||||||||| || Sbjct 1768645 ACCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGA 1768704 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||||| |||||| ||||| ||||||||| | || |||||||||||||| || || Sbjct 1768705 GAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 1768764 Query 118631 TATGCCCTCCTTGTC 118645 || ||||||||||| Sbjct 1768765 AATTCCCTCCTTGTC 1768779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830114485368