Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq52 104 3e-17 seq51 104 3e-17 >seq52 Length=870417 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| || | ||| |||||| ||||| ||||| |||| Sbjct 711991 TCCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA 711932 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || | || || |||||||| |||||||| || || |||||||| || | || Sbjct 711931 AAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGG 711872 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| ||| ||| | || | || | || | | ||||| || || | Sbjct 711871 AATTCCCTCCTTATCC-TGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAA 711813 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| |||||||| || || || || || || || ||||||||||| Sbjct 711812 CATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq51 Length=900598 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||| | ||||| || | ||| |||||| || || ||||| |||| Sbjct 383031 TCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 382972 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || |||||||| |||||||| || || |||||||| || | || Sbjct 382971 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 382912 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 43134 | | |||||| ||| ||| | || | | ||| | | | ||||| || || | Sbjct 382911 AATTCCCTCCTTATCC-TGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGA 382853 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||| | |||||||| || || || || ||||| || ||||||||||| Sbjct 382852 CATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817214023120