Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq1 104 2e-17 >seq1 Length=1966360 Score = 104 bits (114), Expect = 2e-17 Identities = 227/336 (68%), Gaps = 7/336 (2%) Strand=Plus/Plus Query 20213 AAGAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATG 20272 |||| | ||||| || || | |||||||| |||||| | |||||||| || | || | Sbjct 1769671 AAGAAGACGATTTAGGCCCGATTTATGGATTCCAATGGCGGCATTTTGGCGCGGCTTACG 1769730 Query 20273 TTGACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATT 20332 | || ||| |||| | ||||| || ||||| | || | || ||| ||| Sbjct 1769731 AAGGCAGAGACAAGGATTACTCGAATCAAGGCGTGGATCAGCTGAAAGAAGTGATTCATT 1769790 Query 20333 TAATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATG 20392 | | ||||| | || | || || |||| ||||||| || ||||| | ||| Sbjct 1769791 TGCTGAAAACCGATCCGTATAACCGACGAATCATTTTATCGGCATGGAATCCGGCGGATT 1769850 Query 20393 TGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATG 20452 || ||||| |||||||||||||| || | | |||||| || | ||| | |||| Sbjct 1769851 TGAGGAAGATGGCGTTGCCTCCATGTCACGTGATGTCCCAATTCTATG-TGC--AGAATG 1769907 Query 20453 ---AATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCA 20509 | || ||||| || ||||| || |||| || |||||||| || || ||||| |||| Sbjct 1769908 GGTACTTATCGTGCCAGATGTACCAGAGATCGGCGGATATGGGTCTTGGCGTTCCATTCA 1769967 Query 20510 ATATTGCAAGTTATGCGCTGCTTACGTATATGATTG 20545 | || ||| ||| ||||| | ||| || | |||| Sbjct 1769968 ACATCGCATCGTATTCGCTGTTAACG-ATTTTATTG 1770002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399183737287030