Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq51 87.8 2e-12 >seq2 Length=1866585 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||||||||||||||||||| |||| || || ||||||||| | || || || | Sbjct 484956 AATATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCT 484897 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || | || ||||||||| || | || || || Sbjct 484896 TCTGATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGAT 484837 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||||||| | || || ||||| || ||| | || || | | | ||| | || || Sbjct 484836 CAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGA-TGGACGTACTCTTTCTGACTA 484778 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 |||||||| || |||||||| ||||| || |||||| | ||| | || || Sbjct 484777 CAACATTCAGAAGGAATCGACCCTTCACCTTGTACTTCGTCTGCGCGGTGG 484727 >seq51 Length=900598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || ||||||||| ||||| |||||||| || || || || ||||| | || || || | Sbjct 382800 AAGCATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTC 382859 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 || |||| |||| | || || | || ||| ||||| || | || || || Sbjct 382860 TTCGGACACCATCGAGAACGTGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGA 382919 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 ||||||||||| || |||||||| || ||| | || ||| | ||| | || || Sbjct 382920 TCAGCAGCGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTA 382979 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || |||||||| ||||| || Sbjct 382980 CAACATCCAGAAGGAGTCCACTCTTCACCTGGTGCT 383015 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766099107680