Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq24 89.7 8e-13 seq7 89.7 8e-13 >seq24 Length=1354787 Score = 89.7 bits (98), Expect = 8e-13 Identities = 473/752 (63%), Gaps = 69/752 (9%) Strand=Plus/Plus Query 127018 GTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGC- 127076 |||||||| || || ||| ||| | |||||| || || ||||||||||| ||||| || Sbjct 43399 GTGGCGATGGCCGCGATCTGGTGGTCGTGCGGACCGCCCTGCAGGCCAGGGAACACCGCG 43458 Query 127077 TCGTTCAATTTCCT---------GCTCTAGTGATTTGCGGTAAAAGATGACTCCGGCTCG 127127 ||||| | ||| | || || || |||||| | ||||| | ||||| || Sbjct 43459 TCGTTGATCTTCTTCTCGAAGTCGCGCTCGT-CCTTGCGGAAGAAGATCATACCGGCGCG 43517 Query 127128 AGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAGGG--- 127184 ||||| | || | ||||||||| || || ||||| ||||| || ||||| || || Sbjct 43518 CGGACCACGCAGCGACTTGTGCGTGGTGGTCGTCACGATGTCGCAGTACTCGAACGGATT 43577 Query 127185 -GCCAGGAATGACTTTGCC---CGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCA 127240 ||| |||| ||| ||| | || ||| ||||| || || || ||||| Sbjct 43578 CGCC-------ACTTCGCCCGTCGCCACCAGGCCGCTGATGTGCGCCATGTCCATCATCA 43630 Query 127241 GCAAGGAGCCG--GCTGCATCGGCAATCTCTCGGAATCGTCTATAGTCCA-AGCGCCGAG 127297 | | | |||| |||| || || |||| ||||| || ||||||| | || || | Sbjct 43631 GGATCGCGCCGCAGCTG--TCCGCGATCTTGCGGAAGCGCGCGTAGTCCAGATCG-CGCG 43687 Query 127298 GATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAA 127357 | ||| | | || || ||||| ||| || ||| | | || || | | | Sbjct 43688 GGTAGGCAGAGAAACCCGCGATGATCAGCTCGGGCTTGTACACGTTCGCCGATTTCTCCA 43747 Query 127358 GTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAA 127417 | | | | || |||| ||| ||||||| |||||| | ||| || | | ||||| | Sbjct 43748 GCTCGTCGTAATCGATGAGACCAGTCTCGCTATCCACGTGGTAGGGAAGCGTCTCGAAGA 43807 Query 127418 AGAGTGATG--------------TAGCGGAC----------------ACGTTGCGGAATC 127447 ||| || | | ||| || | | || | | | Sbjct 43808 AGATCGAGGAGCCAGAAAGGGCCTTGCGCACTCCCGTCTTGGGATTGAAGGTGTAGTAAC 43867 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 |||||||||| || || || || ||||| | ||||| |||| | ||| || || | Sbjct 43868 CGTGCGTCAGATGACCACCCGAAGGAAGATCCAAGCCCATAATTCGGCTGTGGGGCTTCA 43927 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | || |||||||| || ||||| || || || || || || || ||| ||| | Sbjct 43928 GCAGACCCGTGTACACAGCCAAGTTCGCGGGAGAACCGGAATAGGGCTGGACATTCACAC 43987 Query 127568 CCCA---TTCGGACTCGTTCAAATTGAACGC-TCTGAGACATCGCTGCTGTGCTAGCAGT 127623 |||| ||| | || ||||| | || | || || |||| ||| ||| | Sbjct 43988 CCCACTTTTCAG---GGTCCAAATGATAAGCGGCCAAGGCA-CGCTTCTGGCAGAGCTGC 44043 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 ||||| |||||| |||||||| || || || || || | || || ||||||||| Sbjct 44044 TCGATTTCATCGATGAACTCGTTGCCTCCGTAATAACGGTGACCCGGATATCCCTCCGAG 44103 Query 127684 TACTTGTTGATGAGACACGAACTCATGCATTC 127715 || ||||| | |||||||| | || ||| || Sbjct 44104 TATTTGTTTGTAAGACACGATCCCAAGCACTC 44135 >seq7 Length=485911 Score = 89.7 bits (98), Expect = 8e-13 Identities = 473/752 (63%), Gaps = 69/752 (9%) Strand=Plus/Minus Query 127018 GTGGCGATCGCTGCAATCGTGTGATTGTGCGGTCCACCTTGCAGGCCAGGAAACACGGC- 127076 |||||||| || || ||| ||| | |||||| || || ||||||||||| ||||| || Sbjct 34592 GTGGCGATGGCCGCGATCTGGTGGTCGTGCGGACCGCCCTGCAGGCCAGGGAACACCGCG 34533 Query 127077 TCGTTCAATTTCCT---------GCTCTAGTGATTTGCGGTAAAAGATGACTCCGGCTCG 127127 ||||| | ||| | || || || |||||| | ||||| | ||||| || Sbjct 34532 TCGTTGATCTTCTTCTCGAAGTCGCGCTCGT-CCTTGCGGAAGAAGATCATACCGGCGCG 34474 Query 127128 AGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTCACAATGTCACAATACTCAAAGGG--- 127184 ||||| | || | ||||||||| || || ||||| ||||| || ||||| || || Sbjct 34473 CGGACCACGCAGCGACTTGTGCGTGGTGGTCGTCACGATGTCGCAGTACTCGAACGGATT 34414 Query 127185 -GCCAGGAATGACTTTGCC---CGCAATCAAGCCCGCAATGTGTGCAATATCGGCCATCA 127240 ||| |||| ||| ||| | || ||| ||||| || || || ||||| Sbjct 34413 CGCC-------ACTTCGCCCGTCGCCACCAGGCCGCTGATGTGCGCCATGTCCATCATCA 34361 Query 127241 GCAAGGAGCCG--GCTGCATCGGCAATCTCTCGGAATCGTCTATAGTCCA-AGCGCCGAG 127297 | | | |||| |||| || || |||| ||||| || ||||||| | || || | Sbjct 34360 GGATCGCGCCGCAGCTG--TCCGCGATCTTGCGGAAGCGCGCGTAGTCCAGATCG-CGCG 34304 Query 127298 GATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAA 127357 | ||| | | || || ||||| ||| || ||| | | || || | | | Sbjct 34303 GGTAGGCAGAGAAACCCGCGATGATCAGCTCGGGCTTGTACACGTTCGCCGATTTCTCCA 34244 Query 127358 GTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAA 127417 | | | | || |||| ||| ||||||| |||||| | ||| || | | ||||| | Sbjct 34243 GCTCGTCGTAATCGATGAGACCAGTCTCGCTATCCACGTGGTAGGGAAGCGTCTCGAAGA 34184 Query 127418 AGAGTGATG--------------TAGCGGAC----------------ACGTTGCGGAATC 127447 ||| || | | ||| || | | || | | | Sbjct 34183 AGATCGAGGAGCCAGAAAGGGCCTTGCGCACTCCCGTCTTGGGATTGAAGGTGTAGTAAC 34124 Query 127448 CGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAA 127507 |||||||||| || || || || ||||| | ||||| |||| | ||| || || | Sbjct 34123 CGTGCGTCAGATGACCACCCGAAGGAAGATCCAAGCCCATAATTCGGCTGTGGGGCTTCA 34064 Query 127508 CGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTC 127567 | || |||||||| || ||||| || || || || || || || ||| ||| | Sbjct 34063 GCAGACCCGTGTACACAGCCAAGTTCGCGGGAGAACCGGAATAGGGCTGGACATTCACAC 34004 Query 127568 CCCA---TTCGGACTCGTTCAAATTGAACGC-TCTGAGACATCGCTGCTGTGCTAGCAGT 127623 |||| ||| | || ||||| | || | || || |||| ||| ||| | Sbjct 34003 CCCACTTTTCAG---GGTCCAAATGATAAGCGGCCAAGGCA-CGCTTCTGGCAGAGCTGC 33948 Query 127624 TCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAG 127683 ||||| |||||| |||||||| || || || || || | || || ||||||||| Sbjct 33947 TCGATTTCATCGATGAACTCGTTGCCTCCGTAATAACGGTGACCCGGATATCCCTCCGAG 33888 Query 127684 TACTTGTTGATGAGACACGAACTCATGCATTC 127715 || ||||| | |||||||| | || ||| || Sbjct 33887 TATTTGTTTGTAAGACACGATCCCAAGCACTC 33856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058699785040