Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq52 132 1e-25 seq2 132 1e-25 seq51 131 4e-25 >seq52 Length=870417 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || |||||||| || |||||||| ||||| | || || Sbjct 711976 AAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATC 711917 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || |||||||| ||||| || | ||| ||||| || || ||||| || ||||| Sbjct 711916 CTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATC 711857 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || || || || || || || || || || Sbjct 711856 CTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGT 711797 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || |||||||| || || || ||||| Sbjct 711796 CTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 132 bits (146), Expect = 1e-25 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 |||||| || || | || ||||| |||||||| || |||||||| ||||| | || || Sbjct 484741 AAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATC 484800 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || ||||||||||| || | | ||| ||||| || || ||||| || || || Sbjct 484801 CTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTC 484860 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || || || || | |||||| || || || || || || || || Sbjct 484861 CTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGT 484920 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATTTT 104562 ||| ||||| | || ||||| || || ||||| || Sbjct 484921 CTTTCCAGTCAAAGTCTTTACGAAAATTTGCATATT 484956 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| || || | || || || || || |||||| Sbjct 1646166 GTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCA 1646107 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || || ||||||||||| || || Sbjct 1646106 GCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTC 1646047 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 || || || | |||||| | || || || || ||||||||||| || Sbjct 1646046 ACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCTTTCC 1645997 Score = 109 bits (120), Expect = 1e-18 Identities = 126/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || |||||||| || || | || || || || || |||||| Sbjct 1768676 GTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCA 1768735 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || || ||||||||||| || || Sbjct 1768736 GCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTC 1768795 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACC 104532 || || || | |||||| | || || || || ||||||||||| || Sbjct 1768796 ACGTTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCTTTCC 1768845 >seq51 Length=900598 Score = 131 bits (144), Expect = 4e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | |||||| || || || |||||| Sbjct 383000 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCCTCGAGCTGCTTTCCA 382941 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || ||||| || | ||| ||||| || || ||||| || |||||||||||||| || || Sbjct 382940 GCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCCTGAATCTTGGCCTTC 382881 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || || || || || || ||||| ||||| || || Sbjct 382880 ACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTCTTTCCAGTGAGAGTC 382821 Query 104543 TTTACAAATATCTGCAT 104559 || || || || ||||| Sbjct 382820 TTAACGAAGATTTGCAT 382804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151397603376232