Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq51 109 5e-19 seq52 102 7e-17 seq2 98.7 9e-16 >seq51 Length=900598 Score = 109 bits (120), Expect = 5e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||| | || || | ||||| ||| | ||| || ||||| || | ||| || || Sbjct 383032 CTCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAG 382973 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||| ||||| ||||| ||||| | || || | | ||||||||||| | Sbjct 382972 AAAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGG 382913 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || || || | ||| || ||||| ||| ||| ||||| | |||| Sbjct 382912 GAATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGA 382853 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 | |||| |||||||| |||||||| ||||| || || ||||| ||||||||| Sbjct 382852 CATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCATGCTT 382800 >seq52 Length=870417 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 94779 CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGC 94838 ||||||| | || || | ||||| ||| | ||| || ||||| || | ||| || || Sbjct 711992 CTCCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAG 711933 Query 94839 TCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | |||| | |||||| ||||| ||||| | || || | | ||||||||||| | Sbjct 711932 AAAGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGG 711873 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| || || || || | ||| || ||||| || ||| |||||||| || | Sbjct 711872 GAATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAA 711813 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || | |||||||| || || || || |||||||| ||||| ||||| Sbjct 711812 CATCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 >seq2 Length=1866585 Score = 98.7 bits (108), Expect = 9e-16 Identities = 125/171 (73%), Gaps = 1/171 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| ||||| ||||| ||||||| || | ||||||||||| ||||| || || || Sbjct 484798 ATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTT 484857 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | ||| || ||||| ||| ||| || |||| || || |||| ||||| Sbjct 484858 GTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGAT 484917 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTTACAACATATTT 95022 || |||||||| | ||| || || || || ||||| ||| || |||||| Sbjct 484918 CGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCAT-ATTATAATATATTT 484967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448290897403440