Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14 111 2e-20 seq1 93.3 7e-15 seq2 84.2 3e-12 >seq14 Length=315468 Score = 111 bits (122), Expect = 2e-20 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||| || | || || |||||||| ||||| |||||||||||||| | || ||| Sbjct 295731 CGTGATAATATTCTGGGTATTACCAAGCCCGCTATTCGTCGTCTGGCTCGCAGAGGAGGA 295790 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || || ||||||| || | ||| ||| |||||| |||||| Sbjct 295791 GTCAAGCGTATCTCGGGTCTGATCTATGATGAAACCCGTTCTGTGCTGAAGACCTTCCTT 295850 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || | | ||| ||| | || || |||||||| || | ||||||||||| Sbjct 295851 GACGGAGTGGTTCGTGACGCTGTGACGTACACGGAGCACGCCAAGAGAAAGACTGTCACT 295910 Query 16637 TCCATGGATATCGTCTATGCATTGAA 16662 ||||||| | || || || |||| Sbjct 295911 GCCATGGACGTTGTGTACGCGCTGAA 295936 >seq1 Length=1966360 Score = 93.3 bits (102), Expect = 7e-15 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| | || || || ||||| || || |||||||||||||| | || ||| Sbjct 1208911 CGTGATAACATTCTGGGTATTACGAAGCCCGCCATTCGTCGTCTGGCTCGCAGAGGAGGA 1208970 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || ||||||| || | ||| ||| |||||| |||||| Sbjct 1208971 GTGAAGCGTATCTCGGGTCTGATCTATGATGAAACCCGTTCTGTGCTGAAGACCTTCCTT 1209030 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || | | ||| ||| | || || |||||||| || | |||||||| || Sbjct 1209031 GACGGAGTGGTTCGTGACGCTGTGACGTACACGGAGCACGCCAAGAGAAAGACTGTGACT 1209090 Query 16637 TCCATGGATATCGTCTATGCATTGAA 16662 | ||||| | || || || |||| Sbjct 1209091 GCTATGGACGTTGTGTACGCGCTGAA 1209116 Score = 93.3 bits (102), Expect = 7e-15 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| | || || || ||||| || || |||||||||||||| | || || Sbjct 1927076 CGTGATAACATTCTGGGTATTACGAAGCCCGCCATTCGTCGTCTGGCTCGCAGAGGAGGT 1927135 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 ||||||||| |||| || || |||| || || | ||| ||| |||||| |||||| Sbjct 1927136 GTCAAGCGTATCTCGGGTCTGATCTACGATGAAACCCGTTCTGTGCTGAAGACCTTCCTT 1927195 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || | | ||| ||| | || || |||||||| || | |||||||| || Sbjct 1927196 GACGGAGTGGTTCGTGACGCTGTGACGTACACGGAGCACGCCAAGAGAAAGACTGTGACT 1927255 Query 16637 TCCATGGATATCGTCTATGCATTGAA 16662 ||||||| | || || || |||| Sbjct 1927256 GCCATGGACGTTGTGTACGCGCTGAA 1927281 >seq2 Length=1866585 Score = 84.2 bits (92), Expect = 3e-12 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || |||||||| | || || || ||||| || || |||||||||||||| | || || Sbjct 1298862 CGTGATAACATTCTGGGTATTACGAAGCCCGCCATTCGTCGTCTGGCTCGCAGAGGAGGG 1298803 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| |||| || || |||| || || | ||| ||| |||||| |||||| Sbjct 1298802 GTGAAGCGTATCTCGGGTCTGATCTACGATGAAACCCGTTCTGTGCTGAAGACCTTCCTT 1298743 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 | || | | ||| ||| | || || |||||||| || | |||||||| || Sbjct 1298742 GACGGAGTGGTTCGTGACGCTGTGACGTACACGGAGCACGCCAAGAGAAAGACTGTGACT 1298683 Query 16637 TCCATGGATATCGTCTATGCATTGAA 16662 | ||||| | || || || |||| Sbjct 1298682 GCTATGGACGTTGTGTACGCGCTGAA 1298657 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075150627422