Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq2 113 4e-20 seq52 95.1 1e-14 >seq2 Length=1866585 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | |||||||||||| ||||||||||| || Sbjct 1646196 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 1646137 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||||||| || || || Sbjct 1646136 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 1646077 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||| | | ||| | ||||||| |||||||| | Sbjct 1646076 ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACG 1646017 Query 131188 TCGACGGTAA 131197 |||| |||| Sbjct 1646016 TCGAGAGTAA 1646007 Score = 113 bits (124), Expect = 4e-20 Identities = 139/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || |||| ||| ||||| || || | |||||||||||| ||||||||||| || Sbjct 1768646 CCTCCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAG 1768705 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| | || | ||||||||| || || || Sbjct 1768706 AGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGA 1768765 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||| | | ||| | ||||||| |||||||| | Sbjct 1768766 ATTCCCTCCTTGTCCTGAATCTTAGCCTTCACGTTCTCGATCGTATCGGAGGACTCGACG 1768825 Query 131188 TCGACGGTAA 131197 |||| |||| Sbjct 1768826 TCGAGAGTAA 1768835 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || | || | |||||| ||||| ||||||||||| || Sbjct 484727 CCACCGCGCAGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAA 484786 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| |||||||| || || |||| ||||||||||| || || || Sbjct 484787 AGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGA 484846 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| || || ||| | | ||| | ||||| | ||||| | Sbjct 484847 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACA 484906 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || | ||| ||||||||||| ||||| Sbjct 484907 TCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCAT 484953 >seq52 Length=870417 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| ||| ||||| | || | || |||||||| ||||||||||| || Sbjct 711990 CCTCCGCGCAGACGAAGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAA 711931 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| |||||||| || ||| | || | |||||||| || || || Sbjct 711930 AGAGTGCGGCCATCCTCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGA 711871 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || || || ||| | | ||| | ||| || | ||||| | Sbjct 711870 ATTCCCTCCTTATCCTGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACA 711811 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || ||||| ||||| || ||||| Sbjct 711810 TCGAGAGTGATGGTCTTCCCTGTGAGTGTTTTCACGAAGATTTGCAT 711764 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012481391360