Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq2 104 2e-17 seq52 100 2e-16 >seq2 Length=1866585 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || |||||||||||||| || || | ||||| | || |||||||| ||| Sbjct 484953 ATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCTTCT 484894 Query 25059 GACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 || || |||||| |||| || || | ||| ||||| || || ||||| || || || Sbjct 484893 GATACCATCGAGAACGTGAAGGCCAAGATTCA-GGACAAGGAGGGAATTCCCCCAGATCA 484835 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| | || ||||| || || || | || |||| || ||| | || ||||| Sbjct 484834 GCAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTACAA 484775 Query 25178 TATTCAAAAAGAATCCACGCTACA 25201 ||||| || ||||| || || || Sbjct 484774 CATTCAGAAGGAATCGACCCTTCA 484751 >seq52 Length=870417 Score = 100 bits (110), Expect = 2e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || |||||||| || || || || | || || || ||||||| |||| || ||||| Sbjct 711761 ACGATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCT 711820 Query 25056 TCTGACACTATCGAGTCACTGAA-GCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||||||||||||| |||| || || | ||| || || || || ||||| || || Sbjct 711821 TCTGACACTATCGAGAATGTGAAGGCTAAGATTCA-GGATAAGGAGGGAATTCCCCCAGA 711879 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||||| | ||||| || || || || | || |||| |||||| | || || Sbjct 711880 TCAGCAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTA 711939 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| ||||| || || ||||| || || | ||||| | || | |||||| Sbjct 711940 CAACATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGGA 711991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327714816010