Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq2 125 6e-24 seq52 100 2e-16 >seq2 Length=1866585 Score = 125 bits (138), Expect = 6e-24 Identities = 168/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || ||||| || || || ||| |||| ||||| ||||| | Sbjct 484956 AATATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCT 484897 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | |||||| | || | | || || ||||| ||||||||||| ||||| || ||| Sbjct 484896 TCTGATACCATCGAGAACGTGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGAT 484837 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||| | || ||||| || || ||| | |||||| || || | || || ||| Sbjct 484836 CAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTAC 484777 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 |||||||| || ||||| ||| | || | || | || ||||||| || ||| Sbjct 484776 AACATTCAGAAGGAATCGACCCTTCACCTTGTACTTCGTCTGCGCGGTGGATTT 484723 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || ||||| || ||||| || || || || || Sbjct 1646054 AAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAG 1646113 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| |||| || ||||||||||| || || || ||| | || Sbjct 1646114 CAGCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCAC 1646173 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| |||||| Sbjct 1646174 TTGGTGCTCCGTCTGCGTGGAGGT 1646197 Score = 107 bits (118), Expect = 2e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || ||||| ||||||||||| ||||| || ||||| || ||||| || || || || || Sbjct 1768788 AAGATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAG 1768729 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422 ||| | |||||| ||||||| |||| || ||||||||||| || || || ||| | || Sbjct 1768728 CAGCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCAC 1768669 Query 22423 TTAGTTTTGCGATTGCGCGGAGGT 22446 || || | || |||| |||||| Sbjct 1768668 TTGGTGCTCCGTCTGCGTGGAGGT 1768645 >seq52 Length=870417 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22218 GATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCAC 22277 ||||||||| || || ||||| | || || || || ||||||| || || || | | Sbjct 711763 GATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTC 711822 Query 22278 CGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCA 22337 || || | || || | || || ||||| || |||||||| ||||| || ||||| Sbjct 711823 TGACACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCA 711882 Query 22338 ACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAA 22397 || || || || || || || || ||| | |||||| |||||| | || || ||||| Sbjct 711883 GCAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAA 711942 Query 22398 CATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || || ||||| | || | || | || |||||||||| Sbjct 711943 CATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGG 711990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727723766510