Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq2 223 6e-53 seq54 156 8e-33 seq51 154 3e-32 seq52 87.8 3e-12 seq24 87.8 3e-12 seq16 87.8 3e-12 seq13 87.8 3e-12 seq5 87.8 3e-12 seq1 87.8 3e-12 >seq2 Length=1866585 Score = 223 bits (246), Expect = 6e-53 Identities = 372/535 (70%), Gaps = 2/535 (0%) Strand=Plus/Minus Query 268258 CCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCC 268317 ||||||| | | || ||||| || ||||| ||||| || || | |||| | ||| || Sbjct 557030 CCACATTCCATAAACGTAGTCGCGAGCATGACCCCAGTCACGAATGGCGTTGAGGTTTCC 556971 Query 268318 GAGGAACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCG 268377 ||| | ||||| | |||| ||| ||||| | ||| ||| | |||| ||||| || || Sbjct 556970 GAGATAGAGGCAATCCTGCACGCCCAGCTTGATGCGGACAACAGCGCGCGTGATCTTGCG 556911 Query 268378 GGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGC 268437 || || || || || || | || |||||| |||||||| || |||||| || Sbjct 556910 AGTGACAAAAGTGGGACCTCGACGCGGCGACTCGTGATTGAAGAGAATACCGTTGGACAA 556851 Query 268438 GAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAAC 268497 |||||| || || || ||||| ||||| || || |||| || | || ||| ||||| Sbjct 556850 GAACATTCCGTAGGCTTCACGATAGTTTACAACGATCCAATAAGAGAATTGCTTGGCAAC 556791 Query 268498 TGCGTACGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTT 268557 ||| || ||||| |||| ||| || ||| | || ||||| || | | || || Sbjct 556790 ACTGTAAGGGGAACGAGGATAGAAAGGGGTCTTCTCGTTCTGAGGAATAGCCTGCACCTT 556731 Query 268558 GCCAAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGAT 268617 ||| | | ||||||||| || || ||||||| || | || ||||| || || | Sbjct 556730 GCCGTACAACTCGGAGGTAGAAGCCTGGTAGAGACGAGTCTTCTTCTCGAGTCCACAAGT 556671 Query 268618 TCGGATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGG 268677 ||||| || | ||||| ||| || || || ||||||||||| || || | ||||| | Sbjct 556670 ACGGATAGCATTGAGCAGACGGAGGGTACCGATGCCATCCACCTCAGCACTGTACTCGGA 556611 Query 268678 CATCTCGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTT 268737 | ||||| ||||||| ||| |||||||| || |||| ||| || | |||||| || | Sbjct 556610 AAGATCGAAAGACACCTTGACGTGGCTCTGAGCTCCCAAGTTGTAGATCTCATCAGGCTG 556551 Query 268738 GACCTGCTGCA-CGATCTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTG 268791 || || || | || ||| || || | || |||||||| ||||| ||||| Sbjct 556550 GATCTTGGCCATCAGTCCGCAC-AGATTGGAAGAATCGGTGAGATCTCCATAGTG 556497 >seq54 Length=642864 Score = 156 bits (172), Expect = 8e-33 Identities = 350/522 (67%), Gaps = 8/522 (2%) Strand=Plus/Minus Query 176058 GGGTTGTAAGCCGGAATGTTAGTGCTAAATCCTGTTCCTATTCCTGACGATCCATTCACC 176117 ||||||||| || || || ||||| | || || || || ||| | || ||||| Sbjct 344776 GGGTTGTAATTGGGGATCTTGGTGCTGTAGCCGGTACCGATGCCTTCGGCACCGTTCACG 344717 Query 176118 AGGAGAAACGGGATGGTGGGAACATAGTATTCCGGTTCAATCCGGTCGCCGTCATCCTCG 176177 || | | || ||| |||| | ||| | || || || || | | || || || || Sbjct 344716 AGCACCATGGGAATGATGGGGAGATAAAACTCGGGCTCGATGCTCTGCCCCTCCTCGACG 344657 Query 176178 AGGTAGTT---CAGCAGACGCTCGTCGGCCTTGTGGAAAATATCCCGGGTGTTGGGGGAC 176234 || ||||| ||||||| |||||| ||| | ||| || |||||| | || || Sbjct 344656 AGATAGTTGCACAGCAGA---TCGTCGTCCTCTTTGAAGATGAGACGGGTGATCGGAGAG 344600 Query 176235 AGTTGTGTGAAGATATACCTAGCAGACGCACTGTCCTTGCCTCCGTGAAGGCGGGAACCG 176294 || | ||| |||| || | || || || |||||| || || | || ||| Sbjct 344599 AGATAGGTGTAGATGTATCGAGGCGAGGCCGCGTCCTTTCCGCCCAATAATCGACTTCCG 344540 Query 176295 AATTGTCC-GCGAGGAAGAAGCAAATTGATGTTATTCGAACCCACGTAGTCTTGGGCCAT 176353 || || || || ||| ||| || ||||||||| ||||| |||||| |||| || ||||| Sbjct 344539 AACTGACCCGCAGGGACGAA-CAGATTGATGTTGTTCGATCCCACGAAGTCCTGCGCCAT 344481 Query 176354 TCCGACTATGGCGCCCTGGAGAGACGCCTCGCCGTGGTGATAGCCGGCGTTCTCACTTGT 176413 ||||| |||| | | | ||| || ||| |||||||||||| | |||| ||| Sbjct 344480 TCCGATGATGGTGTCGTTGAGGGATTGCTCTCCGTGGTGATAGGCAGCGTGCTCGGAGAC 344421 Query 176414 GTATCCGGCAAACTGCGCGACTTTGATTTCTTGTACGAGGTTGCGCTTCAACGCCGAGAA 176473 || || | ||||| | ||||||||||| ||| || ||||| || || ||| Sbjct 344420 ATAGCCAGAGAACTGAACCACTTTGATTTCGGAGGTGAGCTTTCGCTTGAAGGCGCCGAA 344361 Query 176474 CAGAATCTTCCGCTGCGAGGGCTTCAGACCATCGACGACCGACGGAATGGAACGCTCTAC 176533 |||| || ||||| || ||||| ||||| || ||||| | |||||||| || | Sbjct 344360 GAGAACTTTGCGCTGGGAAGGCTTGAGACCGTCCACGACGCAGGGAATGGAGCGAGCGTT 344301 Query 176534 ATCGTATCTTGAAAAAAGGATAAGGTCTTTGTTTATGAAATC 176575 |||||| | || || |||| || ||||||| ||||| || Sbjct 344300 ATCGTAGCGGGAGAACTGGATCAGCTCTTTGTCCATGAAGTC 344259 >seq51 Length=900598 Score = 154 bits (170), Expect = 3e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 68234 TCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGA 68293 |||||| || || || | |||| ||| || |||||||| || |||||||| || || || Sbjct 383031 TCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 382972 Query 68294 GAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGG 68353 || || | || || || | |||||| || ||||| || || | || || || || || Sbjct 382971 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGG 382912 Query 68354 AATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTAC 68413 ||| || ||||| || |||||||| ||||| ||| |||||||||||| | || || || Sbjct 382911 AATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGAC 382852 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| ||||| ||||| ||||| || ||||| Sbjct 382851 ATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 834846 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 834905 Query 84516 CCC 84518 ||| Sbjct 834906 CCC 834908 >seq52 Length=870417 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 177872 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 177813 Query 84516 CCC 84518 ||| Sbjct 177812 CCC 177810 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 331439 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 331498 Query 84516 CCC 84518 ||| Sbjct 331499 CCC 331501 >seq24 Length=1354787 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 1301701 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1301760 Query 84516 CCC 84518 ||| Sbjct 1301761 CCC 1301763 >seq16 Length=243064 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 162592 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 162533 Query 84516 CCC 84518 ||| Sbjct 162532 CCC 162530 >seq13 Length=1458350 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 1297940 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1297999 Query 84516 CCC 84518 ||| Sbjct 1298000 CCC 1298002 >seq5 Length=491035 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 77446 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 77387 Query 84516 CCC 84518 ||| Sbjct 77386 CCC 77384 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 179717 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 179658 Query 84516 CCC 84518 ||| Sbjct 179657 CCC 179655 >seq1 Length=1966360 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 168087 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 168028 Query 84516 CCC 84518 ||| Sbjct 168027 CCC 168025 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 698947 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 699006 Query 84516 CCC 84518 ||| Sbjct 699007 CCC 699009 Score = 87.8 bits (96), Expect = 3e-12 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 ||||| |||||||||||| ||||||| ||||||||||||| ||||||| |||||||||| Sbjct 1875026 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGGCTCTTAACCTGGTGGTCGGGGGTTCGAGC 1875085 Query 84516 CCC 84518 ||| Sbjct 1875086 CCC 1875088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621777904880