Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq2 136 9e-27 seq51 125 2e-23 seq54 84.2 5e-11 >seq2 Length=1866585 Score = 136 bits (150), Expect = 9e-27 Identities = 182/252 (72%), Gaps = 12/252 (5%) Strand=Plus/Plus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| || | |||||| || |||| || ||| || || || || ||||| | Sbjct 484726 TCCACCGCGCAGACGAAGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGA 484785 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| || || | || ||||| || ||||||| |||||| ||| ||||| Sbjct 484786 AAGAGTACGTCCATCCTCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGA---TCTGG 484842 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || || ||||| || || || |||||||| || || | ||| || || Sbjct 484843 GGGAATTCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTC 484902 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGTTATT 288482 || || || ||||||||||| || |||| |||||| ||||| || |||| |||| Sbjct 484903 CACATCAAGGGTGATCGTCTTTCCAGTCAAAGTCTTTACGAAAATTTGCA------TATT 484956 Query 288483 CTAATATTTTTA 288494 |||||| |||| Sbjct 484957 ATAATATATTTA 484968 Score = 95.1 bits (104), Expect = 3e-14 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||| ||||| || || || | || ||||| ||||| Sbjct 1646160 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 1646101 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| ||||| || || ||||| || || || |||||| Sbjct 1646100 ATCAGACGCTGCTG---ATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTCACG 1646044 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || || | |||| || || || ||||| || || ||||| || Sbjct 1646043 TTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCTTTCC 1645997 Score = 95.1 bits (104), Expect = 3e-14 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || || ||||| | ||| ||||| || || || | || ||||| ||||| Sbjct 1768682 TCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGCTGCTTTCCAGCGAAA 1768741 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| ||||| || || ||||| || || || |||||| Sbjct 1768742 ATCAGACGCTGCTG---ATCTGGGGGAATTCCCTCCTTGTCCTGAATCTTAGCCTTCACG 1768798 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCC 288446 || || || | |||| || || || ||||| || || ||||| || Sbjct 1768799 TTCTCGATCGTATCGGAGGACTCGACGTCGAGAGTAATAGTCTTTCC 1768845 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 72416 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 72475 ||| || ||| | || |||||||| || || ||||| | |||||||||| || || || Sbjct 556703 CCAGGCTTCTACCTCCGAGTTGTACGGCAAGGTGCAGGCTATTCCTCAGAACGAGAAGAC 556762 Query 72476 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 72535 || || |||||||| ||||||| ||||||| ||| | | ||||||||||| | Sbjct 556763 CCCTTTCTATCCTCGTTCCCCTTACAGTGTTGCCAAGCAATTCTCTTATTGGATCGTTGT 556822 Query 72536 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG 72593 ||| || ||||| | || |||| | | |||| ||| |||||||||||| Sbjct 556823 AAACTATCGTGAAGCCTACGGAATGTTCTTGTCCAACGGTATTCTCTTCAATCACGAG 556880 >seq51 Length=900598 Score = 125 bits (138), Expect = 2e-23 Identities = 167/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| || || || | || || || |||| ||| || || ||||| || ||||| | Sbjct 383031 TCCTCCACGCAGACGGAGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 382972 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || ||||| ||||| || | || ||||| ||||| ||||||||||| || |||||| Sbjct 382971 AAGAGTGCGACCGTCCTCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTG---ATCTGG 382915 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 | ||||| || |||||||| || || || |||||||| || || | || || || Sbjct 382914 GGGAATTCCCTCCTTATCCTGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTC 382855 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || ||||| ||||| || || |||||||| ||||| || ||||| Sbjct 382854 GACATCAAGAGTGATGGTCTTTCCAGTGAGAGTCTTAACGAAGATTTGCAT 382804 >seq54 Length=642864 Score = 84.2 bits (92), Expect = 5e-11 Identities = 195/290 (67%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 325367 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 325426 |||||||| ||| | || | ||| |||||||| || ||| || | ||||| || Sbjct 344542 CCGAACTGACCCGCAGGGACGAACAGATTGATGTTGTTCGATCCCACGAAGTCCTGCGCC 344483 Query 325427 AGGTTC--ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTG 325484 | ||| | |||||| | | || ||| || || ||||||||||| ||||| | Sbjct 344482 A--TTCCGATGATGGTGTCGTTGAGGGATTGCTCTCCGTGGTGATAGGCAGCGTGCTCGG 344425 Query 325485 CAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGC 325542 || || || |||||| | || || | |||| || | || |||||||| || Sbjct 344424 AGACATAGCCAGAGAACTGAACCACTTTGATTTCGGAGGTGAGCTTTCGCTTGAAGGCGC 344365 Query 325543 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 325602 ||| | | ||||| || || ||||| |||| ||| || ||||| | |||||| || Sbjct 344364 CGAAGAGA--ACTTTGCGCTGGGAAGGCTTGAGACCGTCCACGACGCAGGGAATGGAGCG 344307 Query 325603 TTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG 325652 | |||||| || |||||| || || || ||||| |||||||||| Sbjct 344306 AGCGTTATCGTAGCGGGAGAACTGGATCAGCTCTTTGTCCATGAAGTCGG 344257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179653583826612