Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2 87.8 4e-12 seq54 84.2 5e-11 >seq2 Length=1866585 Score = 87.8 bits (96), Expect = 4e-12 Identities = 126/178 (71%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 68405 CCAAGCGTCTTCGTCAGAGTTGTATGGAAAAGTGCAAGAAATTCCTCAGACGGAAAATAC 68464 ||| || ||| | || |||||||| || || ||||| | |||||||||| || || || Sbjct 556703 CCAGGCTTCTACCTCCGAGTTGTACGGCAAGGTGCAGGCTATTCCTCAGAACGAGAAGAC 556762 Query 68465 TCCGTTTTATCCTCGAAGCCCTTACGGTGTTGCAAAGTTGTACGCTTATTGGATCTGTAA 68524 || || |||||||| ||||||| ||||||| ||| | | ||||||||||| | Sbjct 556763 CCCTTTCTATCCTCGTTCCCCTTACAGTGTTGCCAAGCAATTCTCTTATTGGATCGTTGT 556822 Query 68525 AAATTACCGTGAGTCGTATAACATGTATGTATGCAACTCGATTTGTTTCAATCACGAG 68582 ||| || ||||| | || |||| | | |||| ||| |||||||||||| Sbjct 556823 AAACTATCGTGAAGCCTACGGAATGTTCTTGTCCAACGGTATTCTCTTCAATCACGAG 556880 >seq54 Length=642864 Score = 84.2 bits (92), Expect = 5e-11 Identities = 195/290 (67%), Gaps = 8/290 (3%) Strand=Plus/Minus Query 297488 CCGAACTGGCCCTCCGGCAACAACCAGTTGATGTTATTGCTTCCGACATAATCCTGTGCA 297547 |||||||| ||| | || | ||| |||||||| || ||| || | ||||| || Sbjct 344542 CCGAACTGACCCGCAGGGACGAACAGATTGATGTTGTTCGATCCCACGAAGTCCTGCGCC 344483 Query 297548 AGGTTC--ACGATGGTCCCTTGCAGAGATGCTTCGCCATGGTGATAGGCGCTATGCTCTG 297605 | ||| | |||||| | | || ||| || || ||||||||||| ||||| | Sbjct 344482 A--TTCCGATGATGGTGTCGTTGAGGGATTGCTCTCCGTGGTGATAGGCAGCGTGCTCGG 344425 Query 297606 CAACGTAACCGCTGAACTGTGCAACCTTCACGTCGGTCGTCAAATTGCGCTTGAA--AGC 297663 || || || |||||| | || || | |||| || | || |||||||| || Sbjct 344424 AGACATAGCCAGAGAACTGAACCACTTTGATTTCGGAGGTGAGCTTTCGCTTGAAGGCGC 344365 Query 297664 TGAATATATCACTTTCCGTTGAGAAGGTTTGAAACCATCAACGACCGACGGAATGCTTCG 297723 ||| | | ||||| || || ||||| |||| ||| || ||||| | |||||| || Sbjct 344364 CGAAGAGA--ACTTTGCGCTGGGAAGGCTTGAGACCGTCCACGACGCAGGGAATGGAGCG 344307 Query 297724 TTCCAGATCGTACCGCGAGAACAAAATAAGTTCCTTGTCGATGAAGTCGG 297773 | |||||| || |||||| || || || ||||| |||||||||| Sbjct 344306 AGCGTTATCGTAGCGGGAGAACTGGATCAGCTCTTTGTCCATGAAGTCGG 344257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879236944900