Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq51 147 5e-30 seq2 143 6e-29 seq52 138 3e-27 >seq51 Length=900598 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| |||| ||||||||||| | ||| | || || Sbjct 383015 AGCACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGACCGTCC 382956 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||| || ||||||||||| || || |||||| || ||| Sbjct 382955 TCGAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 382896 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| |||||| | | || ||||| | ||||| ||| Sbjct 382895 TGAATCTTGGCCTTCACGTTCTCGATGGTGTCCGAAGACTCGACATCAAGAGTGATGGTC 382836 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || |||||||| || || || ||||| Sbjct 382835 TTTCCAGTGAGAGTCTTAACGAAGATTTG 382807 >seq2 Length=1866585 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||| || ||||| ||||| || | ||||||||||| | ||| | |||||| Sbjct 484742 AGTACAAGGTGAAGGGTCGATTCCTTCTGAATGTTGTAGTCAGAAAGAGTACGTCCATCC 484801 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| || ||||| | ||||||||| || || |||||| || ||| Sbjct 484802 TCGAGCTGCTTTCCAGCAAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 484861 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||||| |||| ||| || | | || ||||| | ||||||||| Sbjct 484862 TGAATCTTGGCCTTCACGTTCTCGATGGTATCAGAAGACTCCACATCAAGGGTGATCGTC 484921 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || |||||||| Sbjct 484922 TTTCCAGTCAAAGTCTTTACGAAAATTTG 484950 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| || | ||||||||||| | || | ||||| Sbjct 1646181 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 1646122 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||| || ||||||||||| || || |||||| || ||| Sbjct 1646121 TCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 1646062 Query 199538 TGAATCTTTTGCTTCACG 199555 |||||||| ||||||| Sbjct 1646061 TGAATCTTAGCCTTCACG 1646044 Score = 100 bits (110), Expect = 7e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || ||||||||||| || | ||||||||||| | || | ||||| Sbjct 1768661 AGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCC 1768720 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||| || ||||||||||| || || |||||| || ||| Sbjct 1768721 TCAAGCTGCTTTCCAGCGAAAATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCC 1768780 Query 199538 TGAATCTTTTGCTTCACG 199555 |||||||| ||||||| Sbjct 1768781 TGAATCTTAGCCTTCACG 1768798 >seq52 Length=870417 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || ||||| ||||| |||||||| || | ||||||||||| | ||| | ||||| Sbjct 711975 AGCACCAGGTGAAGAGTGGACTCCTTCTGAATGTTGTAGTCAGAAAGAGTGCGGCCATCC 711916 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||| ||||| || || |||||||| || || |||||| || ||| Sbjct 711915 TCGAGCTGCTTTCCAGCGAAAATCAGGCGCTGCTGATCTGGGGGAATTCCCTCCTTATCC 711856 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| ||||| | | || ||||| | ||||| ||| Sbjct 711855 TGAATCTTAGCCTTCACATTCTCGATAGTGTCAGAAGACTCAACATCGAGAGTGATGGTC 711796 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| || ||||| Sbjct 711795 TTCCCTGTGAGTGTTTTCACGAAGATTTG 711767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920784333618