Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Blastocystis_20hominis_20[genbank_20GCA_5F000151665.1_202010-07-06] 54 sequences; 18,817,245 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq51 120 3e-22 seq2 113 5e-20 seq52 107 2e-18 >seq51 Length=900598 Score = 120 bits (132), Expect = 3e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||| || || |||||||| | || |||||| | | Sbjct 382804 ATGCAAATCTTCGTTAAGACTCTCACTGGAAAGACCATCACTCTTGATGTCGAGTCTTCG 382863 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || || | || || |||||||||||| | || || Sbjct 382864 GACACCATCGAGAACG-TGAAGGCCAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCA 382922 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || |||| ||| || || ||||| || |||| ||||| || |||||||| Sbjct 382923 GCAGCGTCTGATTTTCGCTGGAAAGCAGCTCGAGGACGGTCGCACTCTTTCTGACTACAA 382982 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || ||||||| ||| || | || || Sbjct 382983 CATCCAGAAGGAGTCCACTCTTCACCTGGTGCTCCGTCTGCGTGGAGG 383030 >seq2 Length=1866585 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAA 38329 || || || || || ||||||||||| || |||| | | | |||| | || | || Sbjct 1645997 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACG-TGAAGGCTAA 1646055 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 || | ||||| |||||||||||| | || || ||||| || |||| ||| || || || Sbjct 1646056 GATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCA 1646115 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 ||| || || | ||||||||| ||||||||||| || ||||| |||| ||||| || Sbjct 1646116 GCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTT 1646175 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||| || | || || Sbjct 1646176 GGTGCTCCGTCTGCGTGGAGG 1646196 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 38271 GGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGCA-AACGCTTAAAGAAAA 38329 || || || || || ||||||||||| || |||| | | | |||| | || | || Sbjct 1768845 GGAAAGACTATTACTCTCGACGTCGAGTCCTCCGATACGATCGAGAACG-TGAAGGCTAA 1768787 Query 38330 AATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACA 38389 || | ||||| |||||||||||| | || || ||||| || |||| ||| || || || Sbjct 1768786 GATTCAGGACAAGGAGGGAATTCCCCCAGATCAGCAGCGTCTGATTTTCGCTGGAAAGCA 1768727 Query 38390 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTT 38449 ||| || || | ||||||||| ||||||||||| || ||||| |||| ||||| || Sbjct 1768726 GCTTGAGGATGGCCGCACCCTCTCTGACTACAACATTCAGAAGGAGTCGACCCTGCACTT 1768667 Query 38450 GGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||| || | || || Sbjct 1768666 GGTGCTCCGTCTGCGTGGAGG 1768646 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| |||||||| || | || || || || |||||| | || || ||| | Sbjct 484956 AATATGCAAATTTTCGTAAAGACTTTGACTGGAAAGACGATCACCCTTGATGTGGAGTCT 484897 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | || | || || | ||||| |||||||||||| | || Sbjct 484896 TCTGATACCATCGAGAACG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATTCCCCCAGA 484838 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| | || | || || || ||||| || || | || || || ||||| Sbjct 484837 TCAGCAGCGTTTGATCTTTGCTGGAAAGCAGCTCGAGGATGGACGTACTCTTTCTGACTA 484778 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| || |||||| |||| || || | || || ||| || | || || Sbjct 484777 CAACATTCAGAAGGAATCGACCCTTCACCTTGTACTTCGTCTGCGCGGTGG 484727 >seq52 Length=870417 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| || || |||||||| |||| || ||| | | Sbjct 711764 ATGCAAATCTTCGTGAAAACACTCACAGGGAAGACCATCACTCTCGATGTTGAGTCTTCT 711823 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | || || | || || |||||||||||| | || || Sbjct 711824 GACACTATCGAGAATGTGAAGGCTAAGATTCAGGATAAGGAGGGAATTCCCCCAGATCAG 711883 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || |||| ||| || || ||||| || || | ||||| || ||||||||| Sbjct 711884 CAGCGCCTGATTTTCGCTGGAAAGCAGCTCGAGGATGGCCGCACTCTTTCTGACTACAAC 711943 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || || ||||| | || || || ||||||| ||| || | || || Sbjct 711944 ATTCAGAAGGAGTCCACTCTTCACCTGGTGCTTCGTCTGCGCGGAGG 711990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172462383360